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All interfaces > All interologs > Interface groups > group113 > 4Y4O_1Z_1B vs 6YSI_R_5

Interface analysis


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Common contacts -

4Y4O_1Z
4Y4O_1B
6YSI_R
6YSI_5
Conserved?
1Z:29 [TYR] 1B:73 [A] R:35 [TYR] 5:72 [A] ✔
1Z:29 [TYR] 1B:74 [U] R:35 [TYR] 5:73 [U] ✔
1Z:29 [TYR] 1B:104 [U] R:35 [TYR] 5:101 [U] ✔
1Z:29 [TYR] 1B:105 [A] R:35 [TYR] 5:102 [A] ✔
1Z:19 [ARG] 1B:76 [G] R:25 [ARG] 5:75 [G] ✔
1Z:19 [ARG] 1B:77 [U] R:25 [ARG] 5:76 [U] ✔
1Z:89 [PHE] 1B:105 [A] R:96 [LYS] 5:102 [A] ✔
1Z:89 [PHE] 1B:106 [G] R:96 [LYS] 5:103 [A] ✔
1Z:84 [GLU] 1B:76 [G] R:91 [MET] 5:75 [G] ✔
1Z:84 [GLU] 1B:77 [U] R:91 [MET] 5:76 [U] ✔
1Z:10 [ARG] 1B:75 [G] R:11 [ARG] 5:74 [G] ✔
1Z:10 [ARG] 1B:76 [G] R:11 [ARG] 5:75 [G] ✔
1Z:75 [ASN] 1B:75 [G] R:82 [GLN] 5:74 [G] ✔
1Z:75 [ASN] 1B:76 [G] R:82 [GLN] 5:75 [G] ✔
1Z:25 [PRO] 1B:76 [G] R:31 [PRO] 5:75 [G] ✔
1Z:15 [PRO] 1B:76 [G] R:21 [SER] 5:75 [G] ✔
1Z:15 [PRO] 1B:77 [U] R:21 [SER] 5:76 [U] ✔
1Z:26 [GLY] 1B:75 [G] R:32 [ALA] 5:74 [G] ✔
1Z:27 [VAL] 1B:74 [U] R:33 [ILE] 5:73 [U] ✔
1Z:27 [VAL] 1B:75 [G] R:33 [ILE] 5:74 [G] ✔
1Z:85 [HIS] 1B:75 [G] R:92 [HIS] 5:74 [G] ✔
1Z:85 [HIS] 1B:76 [G] R:92 [HIS] 5:75 [G] ✔
1Z:34 [ASN] 1B:73 [A] R:41 [PRO] 5:72 [A] ✔
1Z:34 [ASN] 1B:74 [U] R:41 [PRO] 5:73 [U] ✔
1Z:16 [SER] 1B:77 [U] R:22 [ARG] 5:76 [U] ✔
1Z:30 [ASN] 1B:105 [A] R:36 [GLY] 5:102 [A] ✔
1Z:87 [ASP] 1B:75 [G] R:94 [ASP] 5:74 [G] ✔
1Z:87 [ASP] 1B:103 [G] R:94 [ASP] 5:100 [G] ✔
1Z:87 [ASP] 1B:104 [U] R:94 [ASP] 5:101 [U] ✔
1Z:72 [ARG] 1B:104 [U] R:79 [GLN] 5:101 [U] ✔
1Z:72 [ARG] 1B:105 [A] R:79 [GLN] 5:102 [A] ✔
1Z:20 [ARG] 1B:95 [C] R:26 [ARG] 5:92 [A] ❌ 6YSI_R_5
1Z:16 [SER] 1B:93 [G] R:22 [ARG] 5:90 [C] ❌ 4Y4O_1Z_1B
1Z:20 [ARG] 1B:93 [G] R:26 [ARG] 5:90 [C] ❌ 4Y4O_1Z_1B
1Z:75 [ASN] 1B:77 [U] R:82 [GLN] 5:76 [U] ❌ 4Y4O_1Z_1B
1Z:79 [ARG] 1B:92 [C] R:86 [ALA] 5:89 [C] ❌ 6YSI_R:86, 6YSI_5:89 no longer at interface
1Z:73 [GLN] 1B:102 [A] R:80 [ALA] 5:99 [A] ❌ 6YSI_R:80, 6YSI_5:99 no longer at interface
1Z:80 [ARG] 1B:92 [C] R:87 [LYS] 5:89 [C] ❌ 6YSI_R:87, 6YSI_5:89 no longer at interface
1Z:16 [SER] 1B:94 [C] R:22 [ARG] 5:91 [C] ❌ 4Y4O_1B:94 no longer at interface
1Z:16 [SER] 1B:79 [C] R:22 [ARG] 5:78 [G] ❌ 4Y4O_1B:79 no longer at interface
1Z:16 [SER] 1B:78 [A] R:22 [ARG] 5:77 [A] ❌ 4Y4O_1B:78 no longer at interface
1Z:20 [ARG] 1B:94 [C] R:26 [ARG] 5:91 [C] ❌ 4Y4O_1B:94 no longer at interface
1Z:36 [LYS] 1B:75 [G] R:43 [ALA] 5:74 [G] ❌ 6YSI_R:43 no longer at interface
1Z:79 [ARG] 1B:93 [G] R:86 [ALA] 5:90 [C] ❌ 6YSI_R:86 no longer at interface
1Z:73 [GLN] 1B:75 [G] R:80 [ALA] 5:74 [G] ❌ 6YSI_R:80 no longer at interface
1Z:73 [GLN] 1B:103 [G] R:80 [ALA] 5:100 [G] ❌ 6YSI_R:80 no longer at interface
1Z:73 [GLN] 1B:104 [U] R:80 [ALA] 5:101 [U] ❌ 6YSI_R:80 no longer at interface
1Z:80 [ARG] 1B:93 [G] R:87 [LYS] 5:90 [C] ❌ 6YSI_R:87 no longer at interface
1Z:14 [LYS] 1B:95 [C] R:20 [ALA] 5:92 [A] ❌ 6YSI_R:20 no longer at interface
1Z:14 [LYS] 1B:96 [U] R:20 [ALA] 5:93 [U] ❌ 6YSI_R:20 no longer at interface
1Z:31 [ARG] 1B:105 [A] R:37 [GLY] 5:102 [A] ❌ 6YSI_R:37 no longer at interface
1Z:31 [ARG] 1B:106 [G] R:37 [GLY] 5:103 [A] ❌ 6YSI_R:37 no longer at interface
1Z:13 [GLU] 1B:76 [G] R:15 [LYS] 5:75 [G] ❌ 4Y4O_1Z:13 no longer at interface
1Z:17 [ALA] 1B:96 [U] R:23 [ARG] 5:93 [U] ❌ 4Y4O_1Z:17 no longer at interface
1Z:17 [ALA] 1B:95 [C] R:23 [ARG] 5:92 [A] ❌ 4Y4O_1Z:17 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L25-like 5S ribosomal RNA 0.87 1.36 0.30 0.85 0.88 0.74 0.86 0.60 0.80 0.28 0.83


Other pairs involving 4Y4O_1Z_1B or 6YSI_R_5

Total number of entries: 11

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1DFU_P_M,N 6YSI_R_5 0.80 0.81 0.65 0.47 Ribosomal protein L25-like compare
6S0Z_T_B 6YSI_R_5 0.71 0.9 1.95 0.39 Ribosomal protein L25-like 5S ribosomal RNA compare
6YSI_R_5 7ASM_T_B 0.65 0.9 2.0 0.39 Ribosomal protein L25-like 5S ribosomal RNA compare
1FEU_A_B,C 4Y4O_1Z_1B 0.85 0.83 1.11 0.71 Ribosomal protein L25-like compare
1FEU_A_B,C 6YSI_R_5 0.67 0.55 1.0 0.3 Ribosomal protein L25-like compare
4Y4O_1Z_1B 6S0Z_T_B 0.63 0.87 1.54 0.35 Ribosomal protein L25-like 5S ribosomal RNA compare
4Y4O_1Z_1B 7ASM_T_B 0.61 0.88 1.55 0.35 Ribosomal protein L25-like 5S ribosomal RNA compare
4Y4O_1Z_1B 7RYG_U_B 0.59 0.82 1.7 0.32 Ribosomal protein L25-like 5S ribosomal RNA compare
4Y4O_1Z_1B 6YSI_R_5 0.60 0.87 1.36 0.3 Ribosomal protein L25-like 5S ribosomal RNA compare
4Y4O_1Z_1B 4YBB_DW_DB 0.66 0.87 1.58 0.26 Ribosomal protein L25-like 5S ribosomal RNA compare
4YBB_DW_DB 6YSI_R_5 0.92 0.97 0.56 0.83 Ribosomal protein L25-like 5S ribosomal RNA compare