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All interfaces > All interologs > Interface groups > group113 > 4YBB_DW_DB vs 6YSI_R_5

Interface analysis


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Common contacts -

4YBB_DW
4YBB_DB
6YSI_R
6YSI_5
Conserved?
DW:19 [ARG] DB:94 [A] R:23 [ARG] 5:92 [A] ✔
DW:19 [ARG] DB:95 [U] R:23 [ARG] 5:93 [U] ✔
DW:12 [GLN] DB:75 [G] R:16 [GLN] 5:74 [G] ✔
DW:12 [GLN] DB:76 [G] R:16 [GLN] 5:75 [G] ✔
DW:90 [ASP] DB:75 [G] R:94 [ASP] 5:74 [G] ✔
DW:90 [ASP] DB:102 [G] R:94 [ASP] 5:100 [G] ✔
DW:90 [ASP] DB:103 [U] R:94 [ASP] 5:101 [U] ✔
DW:37 [PRO] DB:73 [A] R:41 [PRO] 5:72 [A] ✔
DW:37 [PRO] DB:74 [U] R:41 [PRO] 5:73 [U] ✔
DW:31 [TYR] DB:73 [A] R:35 [TYR] 5:72 [A] ✔
DW:31 [TYR] DB:74 [U] R:35 [TYR] 5:73 [U] ✔
DW:31 [TYR] DB:103 [U] R:35 [TYR] 5:101 [U] ✔
DW:31 [TYR] DB:104 [A] R:35 [TYR] 5:102 [A] ✔
DW:17 [SER] DB:76 [G] R:21 [SER] 5:75 [G] ✔
DW:17 [SER] DB:77 [U] R:21 [SER] 5:76 [U] ✔
DW:92 [VAL] DB:104 [A] R:96 [LYS] 5:102 [A] ✔
DW:28 [ALA] DB:75 [G] R:32 [ALA] 5:74 [G] ✔
DW:9 [ARG] DB:75 [G] R:11 [ARG] 5:74 [G] ✔
DW:9 [ARG] DB:76 [G] R:11 [ARG] 5:75 [G] ✔
DW:75 [GLN] DB:103 [U] R:79 [GLN] 5:101 [U] ✔
DW:75 [GLN] DB:104 [A] R:79 [GLN] 5:102 [A] ✔
DW:18 [ARG] DB:77 [U] R:22 [ARG] 5:76 [U] ✔
DW:18 [ARG] DB:78 [A] R:22 [ARG] 5:77 [A] ✔
DW:18 [ARG] DB:79 [G] R:22 [ARG] 5:78 [G] ✔
DW:18 [ARG] DB:92 [C] R:22 [ARG] 5:90 [C] ✔
DW:18 [ARG] DB:93 [C] R:22 [ARG] 5:91 [C] ✔
DW:13 [GLY] DB:76 [G] R:17 [GLY] 5:75 [G] ✔
DW:13 [GLY] DB:77 [U] R:17 [GLY] 5:76 [U] ✔
DW:13 [GLY] DB:98 [G] R:17 [GLY] 5:96 [G] ✔
DW:14 [LYS] DB:77 [U] R:18 [LYS] 5:76 [U] ✔
DW:14 [LYS] DB:78 [A] R:18 [LYS] 5:77 [A] ✔
DW:14 [LYS] DB:79 [G] R:18 [LYS] 5:78 [G] ✔
DW:14 [LYS] DB:80 [U] R:18 [LYS] 5:79 [U] ✔
DW:14 [LYS] DB:97 [C] R:18 [LYS] 5:95 [U] ✔
DW:14 [LYS] DB:98 [G] R:18 [LYS] 5:96 [G] ✔
DW:32 [GLY] DB:104 [A] R:36 [GLY] 5:102 [A] ✔
DW:15 [GLY] DB:94 [A] R:19 [GLY] 5:92 [A] ✔
DW:78 [GLN] DB:75 [G] R:82 [GLN] 5:74 [G] ✔
DW:78 [GLN] DB:76 [G] R:82 [GLN] 5:75 [G] ✔
DW:78 [GLN] DB:77 [U] R:82 [GLN] 5:76 [U] ✔
DW:27 [PRO] DB:76 [G] R:31 [PRO] 5:75 [G] ✔
DW:21 [ARG] DB:76 [G] R:25 [ARG] 5:75 [G] ✔
DW:21 [ARG] DB:77 [U] R:25 [ARG] 5:76 [U] ✔
DW:88 [HIS] DB:75 [G] R:92 [HIS] 5:74 [G] ✔
DW:88 [HIS] DB:76 [G] R:92 [HIS] 5:75 [G] ✔
DW:87 [GLN] DB:76 [G] R:91 [MET] 5:75 [G] ✔
DW:87 [GLN] DB:77 [U] R:91 [MET] 5:76 [U] ✔
DW:29 [ILE] DB:74 [U] R:33 [ILE] 5:73 [U] ✔
DW:29 [ILE] DB:75 [G] R:33 [ILE] 5:74 [G] ✔
DW:19 [ARG] DB:93 [C] R:23 [ARG] 5:91 [C] ❌ 6YSI_R_5
DW:15 [GLY] DB:95 [U] R:19 [GLY] 5:93 [U] ❌ 6YSI_R_5
DW:92 [VAL] DB:105 [G] R:96 [LYS] 5:103 [A] ❌ 4YBB_DB:105 no longer at interface
DW:76 [ASP] DB:102 [G] R:80 [ALA] 5:100 [G] ❌ 6YSI_R:80 no longer at interface
DW:76 [ASP] DB:103 [U] R:80 [ALA] 5:101 [U] ❌ 6YSI_R:80 no longer at interface
DW:39 [ALA] DB:75 [G] R:43 [ALA] 5:74 [G] ❌ 6YSI_R:43 no longer at interface
DW:33 [GLY] DB:104 [A] R:37 [GLY] 5:102 [A] ❌ 6YSI_R:37 no longer at interface
DW:11 [GLU] DB:76 [G] R:15 [LYS] 5:75 [G] ❌ 4YBB_DW:11 no longer at interface
DW:22 [ALA] DB:92 [C] R:26 [ARG] 5:90 [C] ❌ 4YBB_DW:22 no longer at interface
DW:22 [ALA] DB:93 [C] R:26 [ARG] 5:91 [C] ❌ 4YBB_DW:22 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L25-like 5S ribosomal RNA 0.97 0.56 0.83 0.96 0.94 0.91 1.0 0.92 0.90 0.64 0.80


Other pairs involving 4YBB_DW_DB or 6YSI_R_5

Total number of entries: 12

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1DFU_P_M,N 4YBB_DW_DB 0.97 0.83 0.3 0.53 Ribosomal protein L25-like compare
1DFU_P_M,N 6YSI_R_5 0.80 0.81 0.65 0.47 Ribosomal protein L25-like compare
6S0Z_T_B 6YSI_R_5 0.71 0.9 1.95 0.39 Ribosomal protein L25-like 5S ribosomal RNA compare
6YSI_R_5 7ASM_T_B 0.65 0.9 2.0 0.39 Ribosomal protein L25-like 5S ribosomal RNA compare
1FEU_A_B,C 4YBB_DW_DB 0.68 0.54 1.06 0.25 Ribosomal protein L25-like compare
1FEU_A_B,C 6YSI_R_5 0.67 0.55 1.0 0.3 Ribosomal protein L25-like compare
4Y4O_1Z_1B 6YSI_R_5 0.60 0.87 1.36 0.3 Ribosomal protein L25-like 5S ribosomal RNA compare
4Y4O_1Z_1B 4YBB_DW_DB 0.66 0.87 1.58 0.26 Ribosomal protein L25-like 5S ribosomal RNA compare
4YBB_DW_DB 7RYG_U_B 0.91 0.93 1.12 0.86 Ribosomal protein L25-like 5S ribosomal RNA compare
4YBB_DW_DB 6S0Z_T_B 0.64 0.91 2.15 0.39 Ribosomal protein L25-like 5S ribosomal RNA compare
4YBB_DW_DB 7ASM_T_B 0.61 0.9 2.27 0.38 Ribosomal protein L25-like 5S ribosomal RNA compare
4YBB_DW_DB 6YSI_R_5 0.92 0.97 0.56 0.83 Ribosomal protein L25-like 5S ribosomal RNA compare