RNAprotDB

All interfaces > All interologs > Interface groups > group113 > 4YBB_DW_DB vs 7ASM_T_B

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

4YBB_DW
4YBB_DB
7ASM_T
7ASM_B
Conserved?
DW:19 [ARG] DB:94 [A] T:20 [GLN] B:91 [C] ✔
DW:90 [ASP] DB:75 [G] T:90 [ASP] B:73 [G] ✔
DW:90 [ASP] DB:102 [G] T:90 [ASP] B:99 [G] ✔
DW:39 [ALA] DB:75 [G] T:40 [SER] B:73 [G] ✔
DW:37 [PRO] DB:73 [A] T:38 [ASN] B:71 [A] ✔
DW:37 [PRO] DB:74 [U] T:38 [ASN] B:72 [U] ✔
DW:31 [TYR] DB:73 [A] T:32 [TYR] B:71 [A] ✔
DW:31 [TYR] DB:74 [U] T:32 [TYR] B:72 [U] ✔
DW:31 [TYR] DB:103 [U] T:32 [TYR] B:100 [U] ✔
DW:31 [TYR] DB:104 [A] T:32 [TYR] B:101 [A] ✔
DW:17 [SER] DB:76 [G] T:18 [LEU] B:74 [G] ✔
DW:17 [SER] DB:77 [U] T:18 [LEU] B:75 [U] ✔
DW:92 [VAL] DB:104 [A] T:92 [LEU] B:101 [A] ✔
DW:28 [ALA] DB:75 [G] T:29 [ALA] B:73 [G] ✔
DW:9 [ARG] DB:75 [G] T:9 [ARG] B:73 [G] ✔
DW:9 [ARG] DB:76 [G] T:9 [ARG] B:74 [G] ✔
DW:75 [GLN] DB:103 [U] T:75 [ALA] B:100 [U] ✔
DW:18 [ARG] DB:93 [C] T:19 [LYS] B:90 [U] ✔
DW:13 [GLY] DB:76 [G] T:13 [GLN] B:74 [G] ✔
DW:32 [GLY] DB:104 [A] T:33 [GLY] B:101 [A] ✔
DW:15 [GLY] DB:95 [U] T:15 [ARG] B:92 [C] ✔
DW:78 [GLN] DB:75 [G] T:78 [GLN] B:73 [G] ✔
DW:78 [GLN] DB:76 [G] T:78 [GLN] B:74 [G] ✔
DW:78 [GLN] DB:77 [U] T:78 [GLN] B:75 [U] ✔
DW:27 [PRO] DB:76 [G] T:28 [PRO] B:74 [G] ✔
DW:21 [ARG] DB:76 [G] T:22 [ARG] B:74 [G] ✔
DW:21 [ARG] DB:77 [U] T:22 [ARG] B:75 [U] ✔
DW:88 [HIS] DB:75 [G] T:88 [HIS] B:73 [G] ✔
DW:88 [HIS] DB:76 [G] T:88 [HIS] B:74 [G] ✔
DW:87 [GLN] DB:76 [G] T:87 [THR] B:74 [G] ✔
DW:29 [ILE] DB:74 [U] T:30 [VAL] B:72 [U] ✔
DW:29 [ILE] DB:75 [G] T:30 [VAL] B:73 [G] ✔
DW:19 [ARG] DB:93 [C] T:20 [GLN] B:90 [U] ❌ 7ASM_T_B
DW:19 [ARG] DB:95 [U] T:20 [GLN] B:92 [C] ❌ 7ASM_T_B
DW:12 [GLN] DB:75 [G] T:12 [LYS] B:73 [G] ❌ 7ASM_T_B
DW:12 [GLN] DB:76 [G] T:12 [LYS] B:74 [G] ❌ 7ASM_T_B
DW:90 [ASP] DB:103 [U] T:90 [ASP] B:100 [U] ❌ 7ASM_T_B
DW:75 [GLN] DB:104 [A] T:75 [ALA] B:101 [A] ❌ 7ASM_T_B
DW:18 [ARG] DB:77 [U] T:19 [LYS] B:75 [U] ❌ 7ASM_T_B
DW:18 [ARG] DB:78 [A] T:19 [LYS] B:76 [A] ❌ 7ASM_T_B
DW:18 [ARG] DB:79 [G] T:19 [LYS] B:77 [G] ❌ 7ASM_T_B
DW:13 [GLY] DB:77 [U] T:13 [GLN] B:75 [U] ❌ 7ASM_T_B
DW:13 [GLY] DB:98 [G] T:13 [GLN] B:95 [U] ❌ 7ASM_T_B
DW:14 [LYS] DB:77 [U] T:14 [THR] B:75 [U] ❌ 7ASM_T_B
DW:14 [LYS] DB:78 [A] T:14 [THR] B:76 [A] ❌ 7ASM_T_B
DW:14 [LYS] DB:79 [G] T:14 [THR] B:77 [G] ❌ 7ASM_T_B
DW:14 [LYS] DB:80 [U] T:14 [THR] B:78 [U] ❌ 7ASM_T_B
DW:14 [LYS] DB:97 [C] T:14 [THR] B:94 [C] ❌ 7ASM_T_B
DW:14 [LYS] DB:98 [G] T:14 [THR] B:95 [U] ❌ 7ASM_T_B
DW:15 [GLY] DB:94 [A] T:15 [ARG] B:91 [C] ❌ 7ASM_T_B
DW:87 [GLN] DB:77 [U] T:87 [THR] B:75 [U] ❌ 7ASM_T_B
DW:12 [GLN] DB:98 [G] T:12 [LYS] B:95 [U] ❌ 4YBB_DW_DB
DW:14 [LYS] DB:95 [U] T:14 [THR] B:92 [C] ❌ 4YBB_DW_DB
DW:15 [GLY] DB:78 [A] T:15 [ARG] B:76 [A] ❌ 4YBB_DW_DB
DW:15 [GLY] DB:77 [U] T:15 [ARG] B:75 [U] ❌ 4YBB_DW_DB
DW:15 [GLY] DB:80 [U] T:15 [ARG] B:78 [U] ❌ 4YBB_DW_DB
DW:15 [GLY] DB:79 [G] T:15 [ARG] B:77 [G] ❌ 4YBB_DW_DB
DW:15 [GLY] DB:97 [C] T:15 [ARG] B:94 [C] ❌ 4YBB_DW_DB
DW:18 [ARG] DB:94 [A] T:19 [LYS] B:91 [C] ❌ 4YBB_DW_DB
DW:18 [ARG] DB:92 [C] T:19 [LYS] B:89 [U] ❌ 7ASM_B:89 no longer at interface
DW:14 [LYS] DB:96 [G] T:14 [THR] B:93 [G] ❌ 4YBB_DB:96 no longer at interface
DW:15 [GLY] DB:96 [G] T:15 [ARG] B:93 [G] ❌ 4YBB_DB:96 no longer at interface
DW:76 [ASP] DB:102 [G] T:76 [ASP] B:99 [G] ❌ 7ASM_T:76 no longer at interface
DW:76 [ASP] DB:103 [U] T:76 [ASP] B:100 [U] ❌ 7ASM_T:76 no longer at interface
DW:33 [GLY] DB:104 [A] T:34 [TYR] B:101 [A] ❌ 7ASM_T:34 no longer at interface
DW:16 [ALA] DB:95 [U] T:17 [ASP] B:92 [C] ❌ 4YBB_DW:16 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L25-like 5S ribosomal RNA 0.9 2.27 0.38 0.82 0.86 0.92 0.94 0.61 0.66 0.29 0.21


Other pairs involving 4YBB_DW_DB or 7ASM_T_B

Total number of entries: 11

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1DFU_P_M,N 4YBB_DW_DB 0.97 0.83 0.3 0.53 Ribosomal protein L25-like compare
1FEU_A_B,C 7ASM_T_B 0.63 0.54 0.97 0.29 Ribosomal protein L25-like compare
1FEU_A_B,C 4YBB_DW_DB 0.68 0.54 1.06 0.25 Ribosomal protein L25-like compare
4Y4O_1Z_1B 7ASM_T_B 0.61 0.88 1.55 0.35 Ribosomal protein L25-like 5S ribosomal RNA compare
4Y4O_1Z_1B 4YBB_DW_DB 0.66 0.87 1.58 0.26 Ribosomal protein L25-like 5S ribosomal RNA compare
4YBB_DW_DB 7RYG_U_B 0.91 0.93 1.12 0.86 Ribosomal protein L25-like 5S ribosomal RNA compare
4YBB_DW_DB 6S0Z_T_B 0.64 0.91 2.15 0.39 Ribosomal protein L25-like 5S ribosomal RNA compare
4YBB_DW_DB 7ASM_T_B 0.61 0.9 2.27 0.38 Ribosomal protein L25-like 5S ribosomal RNA compare
4YBB_DW_DB 6YSI_R_5 0.92 0.97 0.56 0.83 Ribosomal protein L25-like 5S ribosomal RNA compare
6S0Z_T_B 7ASM_T_B 0.96 0.99 0.47 1.0 Ribosomal protein L25-like 5S ribosomal RNA compare
6YSI_R_5 7ASM_T_B 0.65 0.9 2.0 0.39 Ribosomal protein L25-like 5S ribosomal RNA compare