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All interfaces > All interologs > Interface groups > group113 > 4YBB_DW_DB vs 7RYG_U_B

Interface analysis


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Common contacts -

4YBB_DW
4YBB_DB
7RYG_U
7RYG_B
Conserved?
DW:19 [ARG] DB:94 [A] U:23 [ARG] B:91 [A] ✔
DW:19 [ARG] DB:95 [U] U:23 [ARG] B:92 [U] ✔
DW:12 [GLN] DB:75 [G] U:16 [GLN] B:73 [G] ✔
DW:12 [GLN] DB:76 [G] U:16 [GLN] B:74 [G] ✔
DW:90 [ASP] DB:75 [G] U:94 [ASP] B:73 [G] ✔
DW:90 [ASP] DB:102 [G] U:94 [ASP] B:99 [G] ✔
DW:37 [PRO] DB:73 [A] U:41 [PRO] B:71 [A] ✔
DW:37 [PRO] DB:74 [U] U:41 [PRO] B:72 [U] ✔
DW:31 [TYR] DB:73 [A] U:35 [TYR] B:71 [A] ✔
DW:31 [TYR] DB:74 [U] U:35 [TYR] B:72 [U] ✔
DW:31 [TYR] DB:103 [U] U:35 [TYR] B:100 [U] ✔
DW:31 [TYR] DB:104 [A] U:35 [TYR] B:101 [A] ✔
DW:17 [SER] DB:76 [G] U:21 [SER] B:74 [G] ✔
DW:17 [SER] DB:77 [U] U:21 [SER] B:75 [U] ✔
DW:92 [VAL] DB:104 [A] U:96 [LYS] B:101 [A] ✔
DW:28 [ALA] DB:75 [G] U:32 [ALA] B:73 [G] ✔
DW:9 [ARG] DB:75 [G] U:11 [ARG] B:73 [G] ✔
DW:9 [ARG] DB:76 [G] U:11 [ARG] B:74 [G] ✔
DW:75 [GLN] DB:103 [U] U:79 [GLN] B:100 [U] ✔
DW:75 [GLN] DB:104 [A] U:79 [GLN] B:101 [A] ✔
DW:18 [ARG] DB:77 [U] U:22 [ARG] B:75 [U] ✔
DW:18 [ARG] DB:78 [A] U:22 [ARG] B:76 [A] ✔
DW:18 [ARG] DB:92 [C] U:22 [ARG] B:89 [C] ✔
DW:18 [ARG] DB:93 [C] U:22 [ARG] B:90 [C] ✔
DW:13 [GLY] DB:76 [G] U:17 [GLY] B:74 [G] ✔
DW:13 [GLY] DB:77 [U] U:17 [GLY] B:75 [U] ✔
DW:13 [GLY] DB:98 [G] U:17 [GLY] B:95 [G] ✔
DW:14 [LYS] DB:77 [U] U:18 [LYS] B:75 [U] ✔
DW:14 [LYS] DB:78 [A] U:18 [LYS] B:76 [A] ✔
DW:14 [LYS] DB:79 [G] U:18 [LYS] B:77 [G] ✔
DW:14 [LYS] DB:80 [U] U:18 [LYS] B:78 [U] ✔
DW:14 [LYS] DB:97 [C] U:18 [LYS] B:94 [U] ✔
DW:14 [LYS] DB:98 [G] U:18 [LYS] B:95 [G] ✔
DW:32 [GLY] DB:104 [A] U:36 [GLY] B:101 [A] ✔
DW:15 [GLY] DB:94 [A] U:19 [GLY] B:91 [A] ✔
DW:78 [GLN] DB:75 [G] U:82 [GLN] B:73 [G] ✔
DW:78 [GLN] DB:76 [G] U:82 [GLN] B:74 [G] ✔
DW:78 [GLN] DB:77 [U] U:82 [GLN] B:75 [U] ✔
DW:27 [PRO] DB:76 [G] U:31 [PRO] B:74 [G] ✔
DW:21 [ARG] DB:76 [G] U:25 [ARG] B:74 [G] ✔
DW:21 [ARG] DB:77 [U] U:25 [ARG] B:75 [U] ✔
DW:88 [HIS] DB:75 [G] U:92 [HIS] B:73 [G] ✔
DW:88 [HIS] DB:76 [G] U:92 [HIS] B:74 [G] ✔
DW:87 [GLN] DB:77 [U] U:91 [MET] B:75 [U] ✔
DW:29 [ILE] DB:74 [U] U:33 [ILE] B:72 [U] ✔
DW:29 [ILE] DB:75 [G] U:33 [ILE] B:73 [G] ✔
DW:19 [ARG] DB:93 [C] U:23 [ARG] B:90 [C] ❌ 7RYG_U_B
DW:90 [ASP] DB:103 [U] U:94 [ASP] B:100 [U] ❌ 7RYG_U_B
DW:18 [ARG] DB:79 [G] U:22 [ARG] B:77 [G] ❌ 7RYG_U_B
DW:15 [GLY] DB:95 [U] U:19 [GLY] B:92 [U] ❌ 7RYG_U_B
DW:87 [GLN] DB:76 [G] U:91 [MET] B:74 [G] ❌ 7RYG_U_B
DW:90 [ASP] DB:74 [U] U:94 [ASP] B:72 [U] ❌ 4YBB_DW_DB
DW:92 [VAL] DB:105 [G] U:96 [LYS] B:102 [A] ❌ 4YBB_DB:105 no longer at interface
DW:76 [ASP] DB:102 [G] U:80 [ALA] B:99 [G] ❌ 7RYG_U:80 no longer at interface
DW:76 [ASP] DB:103 [U] U:80 [ALA] B:100 [U] ❌ 7RYG_U:80 no longer at interface
DW:39 [ALA] DB:75 [G] U:43 [ALA] B:73 [G] ❌ 7RYG_U:43 no longer at interface
DW:33 [GLY] DB:104 [A] U:37 [GLY] B:101 [A] ❌ 7RYG_U:37 no longer at interface
DW:22 [ALA] DB:93 [C] U:26 [ARG] B:90 [C] ❌ 4YBB_DW:22 no longer at interface
DW:22 [ALA] DB:92 [C] U:26 [ARG] B:89 [C] ❌ 4YBB_DW:22 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L25-like 5S ribosomal RNA 0.93 1.12 0.86 0.95 0.87 0.95 1.0 0.91 0.86 0.76 0.54


Other pairs involving 4YBB_DW_DB or 7RYG_U_B

Total number of entries: 10

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1DFU_P_M,N 4YBB_DW_DB 0.97 0.83 0.3 0.53 Ribosomal protein L25-like compare
1FEU_A_B,C 4YBB_DW_DB 0.68 0.54 1.06 0.25 Ribosomal protein L25-like compare
4Y4O_1Z_1B 4YBB_DW_DB 0.66 0.87 1.58 0.26 Ribosomal protein L25-like 5S ribosomal RNA compare
4YBB_DW_DB 6S0Z_T_B 0.64 0.91 2.15 0.39 Ribosomal protein L25-like 5S ribosomal RNA compare
4YBB_DW_DB 6YSI_R_5 0.92 0.97 0.56 0.83 Ribosomal protein L25-like 5S ribosomal RNA compare
4YBB_DW_DB 7ASM_T_B 0.61 0.9 2.27 0.38 Ribosomal protein L25-like 5S ribosomal RNA compare
1DFU_P_M,N 7RYG_U_B 0.80 0.81 0.59 0.47 Ribosomal protein L25-like compare
1FEU_A_B,C 7RYG_U_B 0.65 0.54 0.98 0.32 Ribosomal protein L25-like compare
4Y4O_1Z_1B 7RYG_U_B 0.59 0.82 1.7 0.32 Ribosomal protein L25-like 5S ribosomal RNA compare
4YBB_DW_DB 7RYG_U_B 0.91 0.93 1.12 0.86 Ribosomal protein L25-like 5S ribosomal RNA compare