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All interfaces > All interologs > Interface groups > group113 > 6S0Z_T_B

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6S0Z_T
6S0Z_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
T:9 [ARG] B:73 [G] 2.98 B:98 [A] sugar:SC 0.46
T:9 [ARG] B:74 [G] 3.31 B:97 [G] 0.46
T:12 [LYS] B:93 [G] 4.96 B:78 [U] 27.93
T:12 [LYS] B:94 [C] 4.32 B:77 [G] 27.93
T:13 [GLN] B:74 [G] 4.3 B:97 [G] 0.0
T:14 [THR] B:92 [C] 3.23 B:79 [C] 64.3
T:14 [THR] B:93 [G] 3.73 B:78 [U] 64.3
T:15 [ARG] B:76 [A] 3.38 B:95 [U] 73.42
T:15 [ARG] B:77 [G] 2.98 B:94 [C] base:SC 73.42
T:15 [ARG] B:78 [U] 3.96 B:93 [G] 73.42
T:15 [ARG] B:92 [C] 4.3 B:79 [C] 73.42
T:15 [ARG] B:93 [G] 4.6 B:78 [U] 73.42
T:15 [ARG] B:94 [C] 4.18 B:77 [G] 73.42
T:15 [ARG] B:95 [U] 4.21 B:76 [A] 73.42
T:16 [SER] B:91 [C] 2.96 B:80 [G] 64.67
T:16 [SER] B:92 [C] 3.0 B:79 [C] 64.67
T:18 [LEU] B:74 [G] 3.99 B:97 [G] 62.86
T:18 [LEU] B:75 [U] 3.65 B:96 [A] 62.86
T:19 [LYS] B:89 [U] 4.98 B:82 [A] 67.14
T:19 [LYS] B:90 [U] 3.05 B:81 [A] 67.14
T:19 [LYS] B:91 [C] 3.07 B:80 [G] 67.14
T:20 [GLN] B:91 [C] 4.88 B:80 [G] 38.55
T:22 [ARG] B:74 [G] 3.27 B:97 [G] 97.44
T:22 [ARG] B:75 [U] 3.45 B:96 [A] 97.44
T:28 [PRO] B:74 [G] 4.85 B:97 [G] 98.41
T:29 [ALA] B:73 [G] 4.54 B:98 [A] 88.2
T:30 [VAL] B:72 [U] 3.71 B:99 [G] 88.71
T:30 [VAL] B:73 [G] 3.8 B:98 [A] 88.71
T:32 [TYR] B:71 [A] 4.3 97.88
T:32 [TYR] B:72 [U] 4.54 B:99 [G] 97.88
T:32 [TYR] B:100 [U] 3.02 sugar:SC 97.88
T:32 [TYR] B:101 [A] 3.26 B:70 [G] 97.88
T:33 [GLY] B:101 [A] 4.09 B:70 [G] 96.07
T:38 [ASN] B:71 [A] 3.33 73.49
T:38 [ASN] B:72 [U] 4.37 B:99 [G] 73.49
T:40 [SER] B:73 [G] 4.43 B:98 [A] 65.92
T:75 [ALA] B:100 [U] 4.08 58.04
T:78 [GLN] B:73 [G] 3.56 B:98 [A] 92.55
T:78 [GLN] B:74 [G] 2.53 B:97 [G] base:SC, sugar:SC 92.55
T:78 [GLN] B:75 [U] 4.04 B:96 [A] 92.55
T:87 [THR] B:74 [G] 4.59 B:97 [G] 44.87
T:87 [THR] B:75 [U] 4.98 B:96 [A] 44.87
T:88 [HIS] B:73 [G] 3.08 B:98 [A] base:SC 99.0
T:88 [HIS] B:74 [G] 3.54 B:97 [G] 99.0
T:90 [ASP] B:73 [G] 3.91 B:98 [A] 98.95
T:90 [ASP] B:99 [G] 4.3 B:72 [U] 98.95
T:92 [LEU] B:101 [A] 4.07 B:70 [G] 45.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group113 6S0Z_T_B T: 50s ribosomal protein l25, Staphylococcus aureus (natural) B: 5s ribosomal RNA, Staphylococcus aureus (natural) A0A133Q8Z9 Ribosomal protein L25-like 5S ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6S0Z_T_B 7ASM_T_B 0.96 0.99 0.47 1.0 Ribosomal protein L25-like 5S ribosomal RNA compare
6S0Z_T_B 6YSI_R_5 0.71 0.9 1.95 0.39 Ribosomal protein L25-like 5S ribosomal RNA compare
1FEU_A_B,C 6S0Z_T_B 0.64 0.54 0.91 0.3 Ribosomal protein L25-like compare
4Y4O_1Z_1B 6S0Z_T_B 0.63 0.87 1.54 0.35 Ribosomal protein L25-like 5S ribosomal RNA compare
4YBB_DW_DB 6S0Z_T_B 0.64 0.91 2.15 0.39 Ribosomal protein L25-like 5S ribosomal RNA compare