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All interfaces > All interologs > Interface groups > group113 > 6YSI_R_5

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Licorice
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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

6YSI_R
6YSI_5
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
R:11 [ARG] 5:74 [G] 3.13 5:99 [A] sugar:SC 0.0
R:11 [ARG] 5:75 [G] 3.08 5:98 [G] 0.0
R:15 [LYS] 5:75 [G] 4.54 5:98 [G] 0.0
R:16 [GLN] 5:74 [G] 3.52 5:99 [A] 0.0
R:16 [GLN] 5:75 [G] 3.18 5:98 [G] 0.0
R:17 [GLY] 5:75 [G] 2.95 5:98 [G] 0.0
R:17 [GLY] 5:76 [U] 4.01 5:97 [A] 0.0
R:17 [GLY] 5:96 [G] 3.53 5:77 [A] 0.0
R:18 [LYS] 5:76 [U] 3.88 5:97 [A] 0.0
R:18 [LYS] 5:77 [A] 4.57 5:96 [G] 0.0
R:18 [LYS] 5:78 [G] 2.97 5:95 [U] base:SC, base:SC 0.0
R:18 [LYS] 5:79 [U] 2.91 5:94 [G] 0.0
R:18 [LYS] 5:95 [U] 4.0 5:78 [G] 0.0
R:18 [LYS] 5:96 [G] 3.16 5:77 [A] base:BB 0.0
R:19 [GLY] 5:92 [A] 4.71 5:81 [U] 0.0
R:21 [SER] 5:75 [G] 3.42 5:98 [G] 0.0
R:21 [SER] 5:76 [U] 3.28 5:97 [A] 0.0
R:22 [ARG] 5:76 [U] 4.56 5:97 [A] 0.0
R:22 [ARG] 5:77 [A] 3.35 5:96 [G] 0.0
R:22 [ARG] 5:78 [G] 4.72 5:95 [U] 0.0
R:22 [ARG] 5:90 [C] 3.4 5:83 [G] 0.0
R:22 [ARG] 5:91 [C] 2.97 5:82 [G] 0.0
R:23 [ARG] 5:92 [A] 2.99 5:81 [U] 0.0
R:23 [ARG] 5:93 [U] 2.81 5:80 [G] 0.0
R:25 [ARG] 5:75 [G] 2.76 5:98 [G] 0.0
R:25 [ARG] 5:76 [U] 3.01 5:97 [A] 0.0
R:26 [ARG] 5:90 [C] 3.18 5:83 [G] 0.0
R:26 [ARG] 5:91 [C] 2.43 5:82 [G] 0.0
R:31 [PRO] 5:75 [G] 4.26 5:98 [G] 0.0
R:32 [ALA] 5:74 [G] 4.41 5:99 [A] 0.0
R:33 [ILE] 5:73 [U] 3.5 5:100 [G] 0.0
R:33 [ILE] 5:74 [G] 3.5 5:99 [A] 0.0
R:35 [TYR] 5:72 [A] 3.89 5:101 [U] 0.0
R:35 [TYR] 5:73 [U] 3.94 5:100 [G] 0.0
R:35 [TYR] 5:101 [U] 2.9 5:72 [A] sugar:SC 0.0
R:35 [TYR] 5:102 [A] 3.46 5:71 [G] 0.0
R:36 [GLY] 5:102 [A] 3.71 5:71 [G] 0.0
R:41 [PRO] 5:72 [A] 3.69 5:101 [U] 0.0
R:41 [PRO] 5:73 [U] 3.54 5:100 [G] 0.0
R:79 [GLN] 5:101 [U] 3.37 5:72 [A] 0.0
R:79 [GLN] 5:102 [A] 4.12 5:71 [G] 0.0
R:82 [GLN] 5:74 [G] 3.03 5:99 [A] base:SC 0.0
R:82 [GLN] 5:75 [G] 3.07 5:98 [G] base:SC, sugar:SC 0.0
R:82 [GLN] 5:76 [U] 3.51 5:97 [A] sugar:SC 0.0
R:91 [MET] 5:75 [G] 4.76 5:98 [G] 0.0
R:91 [MET] 5:76 [U] 3.95 5:97 [A] 0.0
R:92 [HIS] 5:74 [G] 2.81 5:99 [A] base:SC 0.0
R:92 [HIS] 5:75 [G] 3.38 5:98 [G] 0.0
R:94 [ASP] 5:74 [G] 3.69 5:99 [A] 0.0
R:94 [ASP] 5:100 [G] 4.45 5:73 [U] 0.0
R:94 [ASP] 5:101 [U] 4.9 5:72 [A] 0.0
R:96 [LYS] 5:102 [A] 3.13 5:71 [G] 0.0
R:96 [LYS] 5:103 [A] 3.91 5:70 [U] 0.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group113 6YSI_R_5 R: 50s ribosomal protein l25, Acinetobacter baumannii atcc 19606 = cip 70.34 = jcm 6841 (natural) 5: 5s ribosomal RNA, Acinetobacter baumannii atcc 19606 = cip 70.34 = jcm 6841 (natural) D0C9L7 Ribosomal protein L25-like 5S ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1DFU_P_M,N 6YSI_R_5 0.80 0.81 0.65 0.47 Ribosomal protein L25-like compare
6S0Z_T_B 6YSI_R_5 0.71 0.9 1.95 0.39 Ribosomal protein L25-like 5S ribosomal RNA compare
6YSI_R_5 7ASM_T_B 0.65 0.9 2.0 0.39 Ribosomal protein L25-like 5S ribosomal RNA compare
1FEU_A_B,C 6YSI_R_5 0.67 0.55 1.0 0.3 Ribosomal protein L25-like compare
4Y4O_1Z_1B 6YSI_R_5 0.60 0.87 1.36 0.3 Ribosomal protein L25-like 5S ribosomal RNA compare
4YBB_DW_DB 6YSI_R_5 0.92 0.97 0.56 0.83 Ribosomal protein L25-like 5S ribosomal RNA compare