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All interfaces > All interologs > Interface groups > group113 > 7RYG_U_B

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7RYG_U
7RYG_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
U:11 [ARG] B:73 [G] 2.95 B:98 [A] sugar:SC 0.0
U:11 [ARG] B:74 [G] 3.13 B:97 [G] 0.0
U:16 [GLN] B:73 [G] 3.89 B:98 [A] 0.0
U:16 [GLN] B:74 [G] 3.49 B:97 [G] 0.0
U:17 [GLY] B:74 [G] 3.07 B:97 [G] 0.0
U:17 [GLY] B:75 [U] 4.63 B:96 [A] 0.0
U:17 [GLY] B:95 [G] 4.37 B:76 [A] 0.0
U:18 [LYS] B:75 [U] 3.92 B:96 [A] 0.0
U:18 [LYS] B:76 [A] 4.44 B:95 [G] 0.0
U:18 [LYS] B:77 [G] 3.07 B:94 [U] base:SC, base:SC 0.0
U:18 [LYS] B:78 [U] 3.41 B:93 [G] 0.0
U:18 [LYS] B:94 [U] 4.02 B:77 [G] 0.0
U:18 [LYS] B:95 [G] 3.72 B:76 [A] base:BB 0.0
U:19 [GLY] B:91 [A] 4.92 B:80 [U] 0.0
U:21 [SER] B:74 [G] 3.89 B:97 [G] 0.0
U:21 [SER] B:75 [U] 3.6 B:96 [A] 0.0
U:22 [ARG] B:75 [U] 4.95 B:96 [A] 0.0
U:22 [ARG] B:76 [A] 3.63 B:95 [G] 0.0
U:22 [ARG] B:89 [C] 3.71 B:82 [G] 0.0
U:22 [ARG] B:90 [C] 2.8 B:81 [G] 0.0
U:23 [ARG] B:91 [A] 2.87 B:80 [U] 0.0
U:23 [ARG] B:92 [U] 2.85 B:79 [G] 0.0
U:25 [ARG] B:74 [G] 2.92 B:97 [G] 0.0
U:25 [ARG] B:75 [U] 2.61 B:96 [A] 0.0
U:26 [ARG] B:89 [C] 2.66 B:82 [G] 0.0
U:26 [ARG] B:90 [C] 3.1 B:81 [G] 0.0
U:31 [PRO] B:74 [G] 4.56 B:97 [G] 0.0
U:32 [ALA] B:73 [G] 4.75 B:98 [A] 0.0
U:33 [ILE] B:72 [U] 3.55 B:99 [G] 0.0
U:33 [ILE] B:73 [G] 3.79 B:98 [A] 0.0
U:35 [TYR] B:71 [A] 3.67 B:100 [U] 0.0
U:35 [TYR] B:72 [U] 4.34 B:99 [G] 0.0
U:35 [TYR] B:100 [U] 2.67 B:71 [A] sugar:SC 0.0
U:35 [TYR] B:101 [A] 3.36 B:70 [G] 0.0
U:36 [GLY] B:101 [A] 4.92 B:70 [G] 0.0
U:41 [PRO] B:71 [A] 3.73 B:100 [U] 0.0
U:41 [PRO] B:72 [U] 3.69 B:99 [G] 0.0
U:79 [GLN] B:100 [U] 3.5 B:71 [A] sugar:SC 0.0
U:79 [GLN] B:101 [A] 3.88 B:70 [G] 0.0
U:82 [GLN] B:73 [G] 3.15 B:98 [A] 0.0
U:82 [GLN] B:74 [G] 2.92 B:97 [G] base:SC, sugar:SC 0.0
U:82 [GLN] B:75 [U] 4.09 B:96 [A] 0.0
U:91 [MET] B:75 [U] 4.37 B:96 [A] 0.0
U:92 [HIS] B:73 [G] 2.52 B:98 [A] sugar:SC 0.0
U:92 [HIS] B:74 [G] 3.15 B:97 [G] 0.0
U:94 [ASP] B:72 [U] 4.92 B:99 [G] 0.0
U:94 [ASP] B:73 [G] 3.76 B:98 [A] base:SC 0.0
U:94 [ASP] B:99 [G] 4.96 B:72 [U] 0.0
U:96 [LYS] B:101 [A] 3.86 B:70 [G] 0.0
U:96 [LYS] B:102 [A] 4.66 B:69 [U] 0.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group113 7RYG_U_B U: 50s ribosomal protein l25, Acinetobacter baumannii (strain ab0057) (natural) B: 5s ribosomal RNA, Acinetobacter baumannii ab0057 (natural) B7I7B6 Ribosomal protein L25-like 5S ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1DFU_P_M,N 7RYG_U_B 0.80 0.81 0.59 0.47 Ribosomal protein L25-like compare
1FEU_A_B,C 7RYG_U_B 0.65 0.54 0.98 0.32 Ribosomal protein L25-like compare
4Y4O_1Z_1B 7RYG_U_B 0.59 0.82 1.7 0.32 Ribosomal protein L25-like 5S ribosomal RNA compare
4YBB_DW_DB 7RYG_U_B 0.91 0.93 1.12 0.86 Ribosomal protein L25-like 5S ribosomal RNA compare