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All interfaces > All interologs > Interface groups > group114 > 3ZJT_A_B

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

3ZJT_A
3ZJT_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:215 [THR] B:4 [C] 3.69 B:69 [G] 43.29
A:218 [THR] B:3 [C] 4.12 B:70 [G] 47.97
A:219 [MET] B:71 [G] 3.99 B:2 [C] 79.52
A:299 [GLU] B:74 [C] 4.02 73.46
A:300 [LYS] B:74 [C] 3.38 84.03
A:324 [ASN] B:74 [C] 3.42 86.84
A:325 [PHE] B:74 [C] 3.03 sugar:BB 77.78
A:327 [LEU] B:74 [C] 4.95 76.79
A:327 [LEU] B:75 [C] 3.39 76.79
A:329 [GLU] B:75 [C] 4.76 57.25
A:330 [TYR] B:75 [C] 3.14 80.56
A:344 [ARG] B:74 [C] 3.82 92.25
A:344 [ARG] B:75 [C] 2.82 92.25
A:415 [TYR] B:75 [C] 4.91 80.31
A:416 [ARG] B:73 [A] 3.17 76.16
A:416 [ARG] B:74 [C] 4.22 76.16
A:416 [ARG] B:75 [C] 2.85 sugar:SC base/AA stacks 76.16
A:418 [ARG] B:75 [C] 2.82 base:SC 90.74
A:595 [ARG] B:26 [A] 3.44 B:44 [C] 34.24
A:595 [ARG] B:27 [A] 3.74 B:43 [U] 34.24
A:597 [GLU] B:27 [A] 4.19 B:43 [U] 44.51
A:598 [LYS] B:10 [G] 3.22 B:25 [C] 59.91
A:599 [GLY] B:26 [A] 3.93 B:44 [C] sugar:BB 62.82
A:599 [GLY] B:27 [A] 4.38 B:43 [U] 62.82
A:600 [ARG] B:10 [G] 3.68 B:25 [C] 44.74
A:648 [PHE] B:12 [G] 4.43 B:23 [C] 91.15
A:648 [PHE] B:23 [C] 3.35 B:12 [G] 91.15
A:648 [PHE] B:24 [A] 3.61 B:11 [U] 91.15
A:649 [ALA] B:12 [G] 3.56 B:23 [C] sugar:BB 75.82
A:649 [ALA] B:13 [G] 3.9 B:22 [A] 75.82
A:650 [SER] B:13 [G] 3.94 B:22 [A] 81.42
A:651 [PRO] B:13 [G] 3.99 B:22 [A] 93.43
A:651 [PRO] B:14 [A] 3.3 B:8 [U] 93.43
A:655 [THR] B:13 [G] 3.86 B:22 [A] 69.42
A:657 [GLU] B:11 [U] 4.72 B:24 [A] 65.91
A:657 [GLU] B:12 [G] 3.27 B:23 [C] 65.91
A:657 [GLU] B:13 [G] 4.84 B:22 [A] 65.91
A:661 [SER] B:25 [C] 2.74 B:10 [G] sugar:SC 49.53
A:661 [SER] B:26 [A] 3.84 B:44 [C] 49.53
A:662 [GLY] B:25 [C] 4.41 B:10 [G] 66.18
A:665 [GLY] B:24 [A] 4.51 B:11 [U] 90.6
A:665 [GLY] B:25 [C] 3.71 B:10 [G] 90.6
A:668 [ARG] B:25 [C] 2.78 B:10 [G] 84.34
A:668 [ARG] B:26 [A] 4.07 B:44 [C] 84.34
A:668 [ARG] B:39 [U] 3.95 B:31 [G] 84.34
A:671 [LYS] B:38 [A] 3.31 50.41
A:671 [LYS] B:39 [U] 2.51 B:31 [G] 50.41
A:672 [ARG] B:24 [A] 4.55 B:11 [U] 83.66
A:672 [ARG] B:40 [C] 3.21 B:30 [G] 83.66
A:675 [LYS] B:39 [U] 4.63 B:31 [G] 39.77
A:675 [LYS] B:40 [C] 4.67 B:30 [G] 39.77
A:711 [LYS] B:16 [U] 4.06 60.67
A:714 [ASP] B:16 [U] 3.4 35.2
A:715 [ASP] B:16 [U] 4.24 70.05
A:718 [ARG] B:16 [U] 2.82 base:SC 40.97
A:719 [ARG] B:15 [A] 2.82 B:48 [U] 39.69
A:719 [ARG] B:16 [U] 3.26 base/AA stacks 39.69
A:723 [ASN] B:13 [G] 4.05 B:22 [A] 98.45
A:723 [ASN] B:14 [A] 3.91 B:8 [U] 98.45
A:724 [THR] B:14 [A] 3.65 B:8 [U] 89.45
A:724 [THR] B:15 [A] 4.4 B:48 [U] 89.45
A:724 [THR] B:22 [A] 4.52 B:13 [G] 89.45
A:727 [ALA] B:22 [A] 3.62 B:13 [G] 85.59
A:727 [ALA] B:23 [C] 3.69 B:12 [G] 85.59
A:730 [MET] B:23 [C] 3.12 B:12 [G] 93.51
A:730 [MET] B:24 [A] 3.88 B:11 [U] 93.51
A:731 [GLU] B:22 [A] 2.58 B:13 [G] sugar:SC 77.75
A:731 [GLU] B:23 [C] 3.41 B:12 [G] 77.75
A:734 [ASN] B:23 [C] 3.95 B:12 [G] 94.33
A:734 [ASN] B:24 [A] 2.92 B:11 [U] 94.33
A:738 [LYS] B:41 [C] 4.15 46.6
A:738 [LYS] B:42 [C] 2.81 B:28 [G] 46.6
A:801 [LEU] B:20 [U] 3.7 29.4
A:803 [VAL] B:20 [U] 3.55 59.11
A:805 [GLN] B:19 [G] 3.18 B:56 [C] base:SC 86.56
A:805 [GLN] B:20 [U] 4.98 86.56
A:805 [GLN] B:56 [C] 4.94 B:19 [G] 86.56
A:807 [ASN] B:56 [C] 4.3 B:19 [G] 95.35
A:807 [ASN] B:57 [A] 4.68 95.35
A:808 [GLY] B:56 [C] 4.31 B:19 [G] 93.29
A:808 [GLY] B:57 [A] 4.25 93.29
A:810 [VAL] B:20 [U] 3.9 36.07
A:810 [VAL] B:20A [A] 4.03 36.07
A:810 [VAL] B:47G [G] 4.22 36.07
A:811 [ARG] B:47G [G] 2.98 87.82
A:811 [ARG] B:47H [C] 2.72 87.82
A:813 [LYS] B:20 [U] 2.97 41.78
A:834 [LEU] B:47E [G] 3.65 41.69
A:834 [LEU] B:47F [C] 3.74 41.69
A:838 [TYR] B:47G [G] 3.3 23.06
A:838 [TYR] B:47H [C] 3.85 23.06
A:846 [LYS] B:56 [C] 3.71 B:19 [G] 84.6
A:848 [ILE] B:19 [G] 3.97 B:56 [C] 88.98
A:848 [ILE] B:56 [C] 3.38 B:19 [G] 88.98
A:850 [VAL] B:19 [G] 3.86 B:56 [C] 83.72
A:853 [LYS] B:19 [G] 2.89 B:56 [C] 85.34
A:854 [LEU] B:19 [G] 3.5 B:56 [C] 76.96
A:856 [ASN] B:19 [G] 4.05 B:56 [C] 93.45
A:856 [ASN] B:56 [C] 2.69 B:19 [G] base:SC, sugar:SC 93.45
A:856 [ASN] B:57 [A] 4.72 93.45
A:858 [VAL] B:56 [C] 3.78 B:19 [G] 88.06

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group114 3ZJT_A_B A: Leucyl-tRNA synthetase, Escherichia coli (genetically engineered) B: tRNAleu5 uaa isoacceptor, Escherichia coli k-12 (synthetic) P07813 acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related & Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) tRNA ✘

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
3ZJT_A_B 5AH5_B_D 0.45 0.87 2.95 0.21 acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related tRNA compare
3ZGZ_A_B 3ZJT_A_B 0.47 0.9 3.08 0.61 acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related & Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) tRNA compare
3ZJT_A_B 4CQN_A_B 0.48 0.9 3.64 0.64 acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related & Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) tRNA compare
3ZJT_A_B 3ZJV_A_B 0.88 0.96 1.43 0.88 acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related & Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) tRNA compare
3ZJT_A_B 4ARC_A_B 0.97 1.0 0.25 0.85 acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related & Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) tRNA compare