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All interfaces > All interologs > Interface groups > group114 > 3ZJV_A_B

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

3ZJV_A
3ZJV_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:215 [THR] B:4 [C] 3.68 B:69 [G] 40.16
A:218 [THR] B:4 [C] 4.63 B:69 [G] 46.74
A:222 [ASN] B:3 [C] 4.27 B:70 [G] 85.81
A:225 [GLY] B:75 [C] 4.9 92.6
A:227 [SER] B:75 [C] 4.89 86.02
A:298 [MET] B:74 [C] 3.44 36.88
A:299 [GLU] B:74 [C] 3.07 base:BB 74.04
A:300 [LYS] B:74 [C] 3.22 base:SC 84.75
A:324 [ASN] B:74 [C] 3.74 87.79
A:325 [PHE] B:74 [C] 2.58 sugar:BB 78.47
A:326 [VAL] B:74 [C] 4.82 91.63
A:327 [LEU] B:74 [C] 3.76 76.8
A:327 [LEU] B:75 [C] 3.24 76.8
A:330 [TYR] B:75 [C] 3.2 78.56
A:344 [ARG] B:74 [C] 3.27 sugar:SC 91.55
A:344 [ARG] B:75 [C] 3.37 91.55
A:415 [TYR] B:75 [C] 4.99 79.59
A:416 [ARG] B:72 [U] 4.54 B:1 [G] 76.59
A:416 [ARG] B:73 [A] 4.23 76.59
A:416 [ARG] B:75 [C] 3.43 base/AA stacks 76.59
A:418 [ARG] B:75 [C] 2.69 base:SC, base:SC 90.35
A:597 [GLU] B:27 [A] 3.96 B:43 [U] sugar:BB 41.56
A:598 [LYS] B:10 [G] 3.36 B:25 [C] sugar:BB 60.73
A:599 [GLY] B:26 [A] 4.22 B:44 [C] 60.46
A:600 [ARG] B:10 [G] 3.71 B:25 [C] 44.08
A:648 [PHE] B:12 [G] 4.15 B:23 [C] 90.02
A:648 [PHE] B:23 [C] 3.52 B:12 [G] 90.02
A:648 [PHE] B:24 [A] 3.51 B:11 [U] 90.02
A:649 [ALA] B:12 [G] 2.82 B:23 [C] sugar:BB 78.2
A:649 [ALA] B:13 [G] 4.26 B:22 [A] 78.2
A:650 [SER] B:12 [G] 4.58 B:23 [C] 81.34
A:650 [SER] B:13 [G] 3.81 B:22 [A] 81.34
A:651 [PRO] B:13 [G] 3.73 B:22 [A] 91.66
A:651 [PRO] B:14 [A] 3.35 B:8 [U] 91.66
A:654 [MET] B:13 [G] 4.71 B:22 [A] 53.03
A:655 [THR] B:13 [G] 3.6 B:22 [A] 65.02
A:657 [GLU] B:11 [U] 4.76 B:24 [A] 64.48
A:657 [GLU] B:12 [G] 3.3 B:23 [C] 64.48
A:659 [GLN] B:11 [U] 4.94 B:24 [A] 71.02
A:661 [SER] B:25 [C] 2.71 B:10 [G] sugar:SC 47.6
A:661 [SER] B:26 [A] 3.88 B:44 [C] 47.6
A:662 [GLY] B:25 [C] 4.57 B:10 [G] 66.47
A:665 [GLY] B:24 [A] 4.59 B:11 [U] 89.85
A:665 [GLY] B:25 [C] 3.76 B:10 [G] 89.85
A:668 [ARG] B:25 [C] 2.96 B:10 [G] 85.06
A:668 [ARG] B:26 [A] 4.17 B:44 [C] 85.06
A:668 [ARG] B:39 [U] 3.14 B:31 [A] 85.06
A:668 [ARG] B:40 [C] 4.11 B:30 [G] 85.06
A:671 [LYS] B:39 [U] 4.2 B:31 [A] 47.74
A:672 [ARG] B:24 [A] 4.57 B:11 [U] 83.71
A:672 [ARG] B:40 [C] 3.45 B:30 [G] 83.71
A:711 [LYS] B:16 [U] 2.71 base:SC 57.63
A:714 [ASP] B:16 [U] 3.65 30.03
A:715 [ASP] B:16 [U] 4.53 68.04
A:718 [ARG] B:16 [U] 2.93 base:SC 32.99
A:719 [ARG] B:15 [A] 2.67 B:48 [U] 44.58
A:719 [ARG] B:16 [U] 3.18 sugar:SC base/AA stacks 44.58
A:723 [ASN] B:13 [G] 3.45 B:22 [A] 97.16
A:723 [ASN] B:14 [A] 3.15 B:8 [U] 97.16
A:724 [THR] B:14 [A] 3.67 B:8 [U] 89.35
A:724 [THR] B:15 [A] 4.3 B:48 [U] 89.35
A:724 [THR] B:22 [A] 4.72 B:13 [G] 89.35
A:727 [ALA] B:22 [A] 3.51 B:13 [G] 85.5
A:727 [ALA] B:23 [C] 3.59 B:12 [G] 85.5
A:730 [MET] B:23 [C] 3.16 B:12 [G] 92.16
A:730 [MET] B:24 [A] 3.97 B:11 [U] 92.16
A:731 [GLU] B:22 [A] 2.75 B:13 [G] sugar:SC 74.65
A:731 [GLU] B:23 [C] 3.49 B:12 [G] 74.65
A:734 [ASN] B:23 [C] 4.06 B:12 [G] 94.33
A:734 [ASN] B:24 [A] 2.89 B:11 [U] 94.33
A:738 [LYS] B:42 [C] 3.71 B:28 [G] 48.74
A:801 [LEU] B:20 [U] 3.86 23.53
A:803 [VAL] B:20 [U] 3.65 59.16
A:805 [GLN] B:19 [G] 4.19 B:56 [C] 85.73
A:805 [GLN] B:20 [U] 4.17 85.73
A:810 [VAL] B:20 [U] 4.08 26.25
A:810 [VAL] B:20A [A] 4.77 26.25
A:811 [ARG] B:47H [C] 3.29 86.07
A:813 [LYS] B:20 [U] 2.72 base:SC 47.19
A:848 [ILE] B:19 [G] 3.86 B:56 [C] 88.74
A:848 [ILE] B:56 [C] 3.7 B:19 [G] 88.74
A:850 [VAL] B:19 [G] 3.64 B:56 [C] 81.68
A:853 [LYS] B:17 [C] 3.64 base:SC 83.79
A:853 [LYS] B:19 [G] 4.87 B:56 [C] 83.79
A:854 [LEU] B:19 [G] 3.48 B:56 [C] 74.59
A:856 [ASN] B:19 [G] 3.88 B:56 [C] 93.13
A:856 [ASN] B:56 [C] 3.24 B:19 [G] base:SC 93.13
A:856 [ASN] B:57 [A] 4.73 93.13
A:858 [VAL] B:56 [C] 4.01 B:19 [G] 88.57

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group114 3ZJV_A_B A: Leucine--tRNA ligase, Escherichia coli (genetically engineered) B: tRNAleu5 uaa isoacceptor, Escherichia coli k-12 (synthetic) P07813 acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related & Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) tRNA ✘

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
3ZJT_A_B 3ZJV_A_B 0.88 0.96 1.43 0.88 acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related & Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) tRNA compare
3ZGZ_A_B 3ZJV_A_B 0.58 0.92 2.97 0.66 acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related & Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) tRNA compare
3ZJV_A_B 5AH5_B_D 0.48 0.88 2.57 0.22 acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related tRNA compare
3ZJV_A_B 4ARC_A_B 0.87 0.96 1.3 0.83 acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related & Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) tRNA compare
3ZJV_A_B 4CQN_A_B 0.59 0.91 2.89 0.71 acid protease & Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases & beta-grasp fold domain in leucine-tRNA ligase & Rubredoxin-related & Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) tRNA compare