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All interfaces > All interologs > Interface groups > group115 > 1JJ2_O_0

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Licorice
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Licorice
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Rim - Core

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1JJ2_O
1JJ2_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
O:1 [THR] 0:1387 [G] 2.8 0:1395 [C] base:BB, sugar:SC 85.55
O:1 [THR] 0:1388 [U] 3.01 0:1392 [A] sugar:BB 85.55
O:1 [THR] 0:1395 [C] 4.5 0:1387 [G] 85.55
O:1 [THR] 0:1396 [C] 3.24 0:1386 [G] 85.55
O:2 [ASP] 0:1395 [C] 3.38 0:1387 [G] 64.0
O:2 [ASP] 0:1396 [C] 3.28 0:1386 [G] 64.0
O:2 [ASP] 0:1436 [C] 4.2 0:1430 [G] 64.0
O:2 [ASP] 0:1437 [A] 4.68 0:1429 [U] 64.0
O:3 [LEU] 0:1396 [C] 2.96 0:1386 [G] sugar:BB 67.41
O:3 [LEU] 0:1397 [C] 3.94 0:1385 [G] 67.41
O:4 [SER] 0:1396 [C] 4.07 0:1386 [G] 42.57
O:4 [SER] 0:1397 [C] 4.83 0:1385 [G] 42.57
O:5 [ALA] 0:1422 [U] 3.72 0:1442 [A] 47.41
O:7 [LYS] 0:1397 [C] 2.83 0:1385 [G] 81.84
O:7 [LYS] 0:1398 [G] 2.91 0:1384 [C] 81.84
O:8 [ARG] 0:1421 [C] 4.45 0:1443 [G] 75.34
O:8 [ARG] 0:1422 [U] 4.74 0:1442 [A] 75.34
O:8 [ARG] 0:1501 [A] 3.19 75.34
O:8 [ARG] 0:1502 [A] 2.82 75.34
O:9 [LEU] 0:1501 [A] 3.69 62.31
O:9 [LEU] 0:1502 [A] 3.72 62.31
O:16 [VAL] 0:1718 [G] 3.96 0:1404 [C] 77.32
O:17 [GLY] 0:1718 [G] 3.18 0:1404 [C] 98.56
O:17 [GLY] 0:1719 [G] 3.41 0:1403 [C] 98.56
O:18 [LYS] 0:1718 [G] 4.63 0:1404 [C] 1.67
O:18 [LYS] 0:1719 [G] 2.91 0:1403 [C] 1.67
O:19 [ASN] 0:1718 [G] 4.95 0:1404 [C] 70.33
O:19 [ASN] 0:1719 [G] 2.86 0:1403 [C] 70.33
O:19 [ASN] 0:1720 [C] 3.17 0:1402 [G] 70.33
O:20 [ARG] 0:1717 [A] 4.4 0:1407 [A] 91.22
O:20 [ARG] 0:1718 [G] 2.91 0:1404 [C] 91.22
O:21 [VAL] 0:1398 [G] 3.41 0:1384 [C] 82.11
O:22 [TRP] 0:1398 [G] 3.36 0:1384 [C] 56.32
O:22 [TRP] 0:1399 [A] 3.64 0:1383 [U] 56.32
O:23 [PHE] 0:1397 [C] 3.22 0:1385 [G] sugar:BB 75.98
O:23 [PHE] 0:1398 [G] 2.92 0:1384 [C] 75.98
O:24 [ASN] 0:1397 [C] 4.32 0:1385 [G] 72.99
O:25 [PRO] 0:1397 [C] 3.53 0:1385 [G] 74.59
O:25 [PRO] 0:1398 [G] 3.14 0:1384 [C] 74.59
O:28 [GLN] 0:1386 [G] 3.31 0:1396 [C] base:SC 2.41
O:28 [GLN] 0:1387 [G] 3.11 0:1395 [C] sugar:SC 2.41
O:28 [GLN] 0:1396 [C] 4.15 0:1386 [G] 2.41
O:28 [GLN] 0:1397 [C] 3.5 0:1385 [G] 2.41
O:35 [ILE] 0:1423 [C] 4.48 0:1441 [G] 77.81
O:35 [ILE] 0:1501 [A] 3.95 77.81
O:36 [THR] 0:1501 [A] 3.53 96.56
O:37 [ARG] 0:1500 [U] 3.39 base/AA stacks 80.15
O:37 [ARG] 0:1501 [A] 2.82 80.15
O:37 [ARG] 0:1502 [A] 2.73 80.15
O:38 [GLU] 0:1500 [U] 4.41 42.81
O:38 [GLU] 0:1501 [A] 4.54 42.81
O:41 [ARG] 0:1499 [U] 3.71 0:1504 [A] 80.78
O:41 [ARG] 0:1500 [U] 2.48 80.78
O:52 [LYS] 0:1398 [G] 4.41 0:1384 [C] 52.94
O:52 [LYS] 0:1399 [A] 2.84 0:1383 [U] 52.94
O:53 [ASP] 0:1556 [G] 4.09 0:1565 [C] 43.65
O:53 [ASP] 0:1717 [A] 4.55 0:1407 [A] 43.65
O:54 [LYS] 0:1566 [C] 4.27 0:1555 [G] 0.88
O:54 [LYS] 0:1567 [A] 4.48 0:1554 [U] 0.88
O:54 [LYS] 0:1568 [G] 4.88 0:1553 [C] 0.88
O:54 [LYS] 0:1716 [A] 4.86 0:1405 [U] 0.88
O:54 [LYS] 0:1717 [A] 3.38 0:1407 [A] 0.88
O:54 [LYS] 0:1718 [G] 4.83 0:1404 [C] 0.88
O:55 [LYS] 0:1566 [C] 4.36 0:1555 [G] 50.01
O:55 [LYS] 0:1715 [C] 3.4 0:1703 [G] sugar:SC 50.01
O:55 [LYS] 0:1716 [A] 2.67 0:1405 [U] sugar:BB 50.01
O:55 [LYS] 0:1717 [A] 3.07 0:1407 [A] 50.01
O:55 [LYS] 0:2736 [U] 3.3 0:2743 [A] sugar:SC 50.01
O:55 [LYS] 0:2737 [C] 3.59 0:2742 [G] 50.01
O:56 [GLY] 0:1566 [C] 3.39 0:1555 [G] 72.98
O:56 [GLY] 0:1567 [A] 3.9 0:1554 [U] 72.98
O:56 [GLY] 0:1716 [A] 3.84 0:1405 [U] 72.98
O:56 [GLY] 0:2737 [C] 3.63 0:2742 [G] 72.98
O:57 [ASN] 0:1565 [C] 4.93 0:1556 [G] 41.23
O:57 [ASN] 0:1566 [C] 3.53 0:1555 [G] 41.23
O:57 [ASN] 0:1703 [G] 3.78 0:1715 [C] 41.23
O:57 [ASN] 0:1704 [G] 3.18 0:1714 [C] base:SC 41.23
O:57 [ASN] 0:1715 [C] 2.89 0:1703 [G] base:SC, sugar:SC 41.23
O:57 [ASN] 0:1716 [A] 3.57 0:1405 [U] 41.23
O:57 [ASN] 0:2736 [U] 3.9 0:2743 [A] 41.23
O:57 [ASN] 0:2737 [C] 3.64 0:2742 [G] 41.23
O:58 [SER] 0:1565 [C] 2.97 0:1556 [G] sugar:SC 92.89
O:58 [SER] 0:1566 [C] 3.56 0:1555 [G] 92.89
O:58 [SER] 0:2736 [U] 4.41 0:2743 [A] 92.89
O:58 [SER] 0:2737 [C] 2.91 0:2742 [G] 92.89
O:58 [SER] 0:2738 [G] 3.07 0:1562 [C] 92.89
O:59 [ARG] 0:1548 [U] 2.87 0:1637 [A] 82.01
O:59 [ARG] 0:1549 [C] 3.18 0:1636 [G] 82.01
O:59 [ARG] 0:1565 [C] 3.62 0:1556 [G] 82.01
O:59 [ARG] 0:1566 [C] 2.76 0:1555 [G] 82.01
O:59 [ARG] 0:1704 [G] 2.83 0:1714 [C] 82.01
O:59 [ARG] 0:1705 [C] 2.89 0:1713 [G] 82.01
O:60 [GLY] 0:1565 [C] 3.76 0:1556 [G] 53.12
O:60 [GLY] 0:1566 [C] 4.5 0:1555 [G] 53.12
O:60 [GLY] 0:2738 [G] 4.75 0:1562 [C] 53.12
O:61 [ARG] 0:2736 [U] 3.18 0:2743 [A] 85.22
O:61 [ARG] 0:2737 [C] 2.5 0:2742 [G] 85.22
O:61 [ARG] 0:2738 [G] 3.42 0:1562 [C] 85.22
O:61 [ARG] 0:2739 [A] 2.82 0:1561 [U] 85.22
O:62 [ALA] 0:1705 [C] 4.18 0:1713 [G] 62.95
O:63 [ARG] 0:1549 [C] 3.06 0:1636 [G] 74.13
O:63 [ARG] 0:1550 [A] 4.86 0:1635 [U] 74.13
O:63 [ARG] 0:1564 [C] 4.95 0:1557 [G] 74.13
O:63 [ARG] 0:1565 [C] 2.7 0:1556 [G] 74.13
O:63 [ARG] 0:1566 [C] 3.33 0:1555 [G] 74.13
O:65 [ARG] 0:1705 [C] 3.01 0:1713 [G] 40.46
O:65 [ARG] 0:1706 [G] 3.01 0:1712 [A] 40.46
O:65 [ARG] 0:2735 [U] 3.4 0:2744 [G] 40.46
O:66 [GLN] 0:1548 [U] 4.49 0:1637 [A] 15.74
O:66 [GLN] 0:1549 [C] 3.79 0:1636 [G] 15.74
O:66 [GLN] 0:1705 [C] 4.61 0:1713 [G] 15.74
O:66 [GLN] 0:1798 [C] 3.42 15.74
O:68 [LYS] 0:1787 [C] 3.0 0:1805 [G] 77.26
O:68 [LYS] 0:1788 [U] 3.64 0:1804 [A] 77.26
O:69 [ARG] 0:1706 [G] 3.92 0:1712 [A] 73.2
O:69 [ARG] 0:1707 [G] 2.87 0:1711 [A] 73.2
O:70 [ALA] 0:1798 [C] 3.5 49.74
O:71 [LYS] 0:1789 [G] 3.78 0:1803 [C] 79.51
O:71 [LYS] 0:1790 [C] 2.93 0:1802 [G] base:BB 79.51
O:71 [LYS] 0:1791 [U] 4.77 0:1801 [A] 79.51
O:72 [GLY] 0:1790 [C] 4.15 0:1802 [G] 92.54
O:72 [GLY] 0:1801 [A] 4.85 0:1791 [U] 92.54
O:72 [GLY] 0:1802 [G] 3.75 0:1790 [C] 92.54
O:73 [HIS] 0:1788 [U] 3.18 0:1804 [A] base/AA stacks 78.82
O:73 [HIS] 0:1789 [G] 2.91 0:1803 [C] base:SC 78.82
O:73 [HIS] 0:1790 [C] 3.97 0:1802 [G] 78.82
O:73 [HIS] 0:1803 [C] 4.67 0:1789 [G] 78.82
O:73 [HIS] 0:1804 [A] 4.86 0:1788 [U] 78.82
O:74 [GLN] 0:1786 [C] 3.64 0:1806 [G] 80.31
O:74 [GLN] 0:1787 [C] 3.01 0:1805 [G] 80.31
O:75 [LYS] 0:1785 [G] 4.76 0:1807 [U] 74.55
O:75 [LYS] 0:1786 [C] 4.85 0:1806 [G] 74.55
O:75 [LYS] 0:1800 [G] 2.73 0:1792 [C] 74.55
O:75 [LYS] 0:1801 [A] 4.46 0:1791 [U] 74.55
O:76 [GLY] 0:1784 [U] 4.45 0:1760 [G] 89.2
O:76 [GLY] 0:1785 [G] 3.05 0:1807 [U] 89.2
O:77 [ALA] 0:1760 [G] 2.72 0:1784 [U] base:BB 3.97
O:77 [ALA] 0:1761 [U] 3.8 0:1783 [A] 3.97
O:77 [ALA] 0:1783 [A] 4.32 0:1761 [U] 3.97
O:77 [ALA] 0:1784 [U] 3.78 0:1760 [G] 3.97
O:77 [ALA] 0:1785 [G] 3.71 0:1807 [U] 3.97
O:78 [GLY] 0:1760 [G] 4.13 0:1784 [U] 98.43
O:78 [GLY] 0:1784 [U] 2.92 0:1760 [G] 98.43
O:78 [GLY] 0:1785 [G] 3.23 0:1807 [U] 98.43
O:78 [GLY] 0:1812 [G] 4.82 0:1808 [C] 98.43
O:78 [GLY] 0:1813 [U] 3.5 0:1817 [U] 98.43
O:78 [GLY] 0:1814 [G] 4.68 98.43
O:79 [SER] 0:1707 [G] 4.28 0:1711 [A] 82.91
O:79 [SER] 0:1760 [G] 4.79 0:1784 [U] 82.91
O:79 [SER] 0:1784 [U] 4.8 0:1760 [G] 82.91
O:79 [SER] 0:1785 [G] 3.82 0:1807 [U] 82.91
O:79 [SER] 0:1786 [C] 4.06 0:1806 [G] 82.91
O:80 [ARG] 0:1707 [G] 4.74 0:1711 [A] 86.47
O:80 [ARG] 0:1708 [C] 4.03 86.47
O:80 [ARG] 0:1760 [G] 2.95 0:1784 [U] base:BB 86.47
O:80 [ARG] 0:1761 [U] 3.82 0:1783 [A] 86.47
O:80 [ARG] 0:1762 [C] 4.43 0:1782 [G] 86.47
O:80 [ARG] 0:1801 [A] 3.54 0:1791 [U] 86.47
O:80 [ARG] 0:1802 [G] 2.67 0:1790 [C] 86.47
O:81 [LYS] 0:1707 [G] 3.01 0:1711 [A] 81.76
O:81 [LYS] 0:1708 [C] 2.99 81.76
O:81 [LYS] 0:1709 [G] 4.84 81.76
O:81 [LYS] 0:1760 [G] 2.69 0:1784 [U] sugar:BB 81.76
O:81 [LYS] 0:1761 [U] 3.24 0:1783 [A] 81.76
O:81 [LYS] 0:1813 [U] 3.38 0:1817 [U] 81.76
O:81 [LYS] 0:1816 [C] 4.64 81.76
O:81 [LYS] 0:1817 [U] 2.56 0:1813 [U] base:SC 81.76
O:82 [GLY] 0:1707 [G] 3.75 0:1711 [A] 98.37
O:82 [GLY] 0:1708 [C] 2.52 98.37
O:82 [GLY] 0:1760 [G] 4.82 0:1784 [U] 98.37
O:82 [GLY] 0:1761 [U] 3.3 0:1783 [A] 98.37
O:83 [LYS] 0:792 [G] 4.04 0:822 [C] 63.53
O:83 [LYS] 0:793 [A] 3.62 0:821 [U] 63.53
O:83 [LYS] 0:1708 [C] 4.54 63.53
O:83 [LYS] 0:1761 [U] 3.68 0:1783 [A] 63.53
O:83 [LYS] 0:1762 [C] 3.26 0:1782 [G] 63.53
O:84 [ALA] 0:793 [A] 4.68 0:821 [U] 34.2
O:84 [ALA] 0:1761 [U] 3.89 0:1783 [A] 34.2
O:84 [ALA] 0:1762 [C] 2.98 0:1782 [G] 34.2
O:85 [GLY] 0:792 [G] 4.32 0:822 [C] 38.33
O:85 [GLY] 0:793 [A] 3.05 0:821 [U] 38.33
O:86 [ALA] 0:792 [G] 3.51 0:822 [C] 82.72
O:86 [ALA] 0:793 [A] 3.38 0:821 [U] 82.72
O:86 [ALA] 0:1708 [C] 3.26 82.72
O:87 [ARG] 0:1707 [G] 4.63 0:1711 [A] 87.16
O:87 [ARG] 0:1708 [C] 3.01 87.16
O:87 [ARG] 0:1799 [G] 3.92 0:1793 [C] sugar:BB 87.16
O:87 [ARG] 0:1800 [G] 3.33 0:1792 [C] 87.16
O:87 [ARG] 0:1801 [A] 2.8 0:1791 [U] 87.16
O:88 [GLN] 0:1793 [C] 4.87 0:1799 [G] 3.92
O:88 [GLN] 0:1799 [G] 3.11 0:1793 [C] base:SC 3.92
O:88 [GLN] 0:1800 [G] 3.49 0:1792 [C] 3.92
O:90 [SER] 0:815 [U] 4.6 0:798 [G] 37.73
O:91 [LYS] 0:815 [U] 4.95 0:798 [G] 93.88
O:91 [LYS] 0:816 [G] 2.61 0:797 [A] 93.88
O:91 [LYS] 0:817 [G] 2.86 0:796 [A] 93.88
O:91 [LYS] 0:1539 [U] 4.01 0:1646 [G] 93.88
O:91 [LYS] 0:1597 [A] 3.32 base:SC 93.88
O:92 [GLU] 0:1640 [C] 4.72 1.2
O:93 [ASP] 0:1793 [C] 4.55 0:1799 [G] 8.71
O:94 [TRP] 0:814 [G] 4.1 0:799 [C] 93.25
O:94 [TRP] 0:815 [U] 3.53 0:798 [G] 93.25
O:94 [TRP] 0:816 [G] 3.95 0:797 [A] 93.25
O:94 [TRP] 0:1597 [A] 3.09 sugar:SC 93.25
O:94 [TRP] 0:1598 [A] 3.44 93.25
O:95 [GLU] 0:1539 [U] 4.26 0:1646 [G] 74.79
O:95 [GLU] 0:1540 [G] 3.57 0:1645 [U] 74.79
O:95 [GLU] 0:1597 [A] 3.3 74.79
O:96 [SER] 0:1794 [G] 3.16 0:1797 [A] sugar:SC 31.02
O:96 [SER] 0:1795 [G] 4.94 31.02
O:96 [SER] 0:1796 [A] 3.95 base:SC 31.02
O:97 [ARG] 0:815 [U] 4.71 0:798 [G] 63.1
O:97 [ARG] 0:1793 [C] 3.69 0:1799 [G] 63.1
O:97 [ARG] 0:1794 [G] 4.12 0:1797 [A] 63.1
O:98 [ILE] 0:1597 [A] 3.84 87.63
O:98 [ILE] 0:1598 [A] 4.6 87.63
O:99 [ARG] 0:1540 [G] 3.02 0:1645 [U] 99.0
O:99 [ARG] 0:1541 [G] 3.01 0:1644 [C] 99.0
O:99 [ARG] 0:1597 [A] 2.67 99.0
O:100 [ALA] 0:1794 [G] 3.73 0:1797 [A] 72.35
O:100 [ALA] 0:1795 [G] 3.37 72.35
O:102 [ARG] 0:1596 [U] 3.21 base/AA stacks 98.92
O:102 [ARG] 0:1597 [A] 3.2 98.92
O:102 [ARG] 0:1598 [A] 2.83 98.92
O:106 [ARG] 0:1596 [U] 3.59 61.24
O:109 [ARG] 0:1594 [C] 2.79 0:1600 [G] 68.33
O:109 [ARG] 0:1595 [G] 3.22 68.33
O:116 [SER] 0:1593 [C] 3.35 0:1601 [G] 7.83
O:116 [SER] 0:1594 [C] 3.49 0:1600 [G] 7.83
O:117 [SER] 0:1593 [C] 2.68 0:1601 [G] 6.74
O:119 [TYR] 0:1593 [C] 4.98 0:1601 [G] 81.79
O:119 [TYR] 0:1594 [C] 3.14 0:1600 [G] 81.79
O:119 [TYR] 0:1595 [G] 2.64 81.79
O:120 [ARG] 0:1593 [C] 3.69 0:1601 [G] base/AA stacks 82.79
O:120 [ARG] 0:1594 [C] 2.82 0:1600 [G] base/AA stacks 82.79
O:120 [ARG] 0:1595 [G] 2.89 base:SC, base:SC 82.79
O:123 [TYR] 0:1595 [G] 3.37 91.58
O:123 [TYR] 0:1596 [U] 2.48 91.58
O:124 [ASP] 0:800 [G] 4.04 0:813 [C] 40.59
O:124 [ASP] 0:801 [U] 3.37 0:812 [A] 40.59
O:124 [ASP] 0:1595 [G] 3.99 40.59
O:125 [LYS] 0:801 [U] 3.82 0:812 [A] 53.08
O:125 [LYS] 0:802 [G] 3.45 0:811 [C] 53.08
O:127 [GLY] 0:800 [G] 3.73 0:813 [C] 88.73
O:127 [GLY] 0:1598 [A] 4.83 88.73
O:128 [GLY] 0:800 [G] 3.02 0:813 [C] base:BB 83.65
O:128 [GLY] 0:801 [U] 3.19 0:812 [A] 83.65
O:128 [GLY] 0:813 [C] 4.59 0:800 [G] 83.65
O:128 [GLY] 0:814 [G] 4.54 0:799 [C] 83.65
O:129 [GLY] 0:813 [C] 4.88 0:800 [G] 80.73
O:129 [GLY] 0:814 [G] 4.16 0:799 [C] 80.73
O:130 [GLU] 0:801 [U] 2.63 0:812 [A] sugar:SC 23.22
O:130 [GLU] 0:802 [G] 3.39 0:811 [C] 23.22
O:132 [ASP] 0:1793 [C] 4.52 0:1799 [G] 73.39
O:132 [ASP] 0:1794 [G] 4.98 0:1797 [A] 73.39
O:133 [SER] 0:1793 [C] 3.38 0:1799 [G] 84.47
O:133 [SER] 0:1794 [G] 3.46 0:1797 [A] 84.47
O:134 [VAL] 0:1793 [C] 4.75 0:1799 [G] 57.22
O:134 [VAL] 0:1794 [G] 3.01 0:1797 [A] 57.22
O:134 [VAL] 0:1795 [G] 4.69 57.22
O:135 [ALA] 0:1793 [C] 3.6 0:1799 [G] 61.09

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group115 1JJ2_O_0 O: Ribosomal protein l19e, Haloarcula marismortui (natural) 0: 23s rRNA, Haloarcula marismortui (natural) P14119 Ribosomal protein L19 (L19e) C-terminal domain & Ribosomal protein L19 (L19e) N-terminal domain Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_O_0 6AZ3_Q_1 0.79 0.76 1.54 0.35 Ribosomal protein L19 (L19e) C-terminal domain & Ribosomal protein L19 (L19e) N-terminal domain compare
1JJ2_O_0 1YHQ_P_0 1.00 1.0 0.13 0.98 Ribosomal protein L19 (L19e) C-terminal domain & Ribosomal protein L19 (L19e) N-terminal domain Archaeal large subunit ribosomal RNA compare
1JJ2_O_0 6AZ3_Q_2 0.74 0.8 1.53 0.26 Ribosomal protein L19 (L19e) C-terminal domain & Ribosomal protein L19 (L19e) N-terminal domain compare
1JJ2_O_0 7O7Y_BR_B5 0.84 0.94 1.43 0.33 Ribosomal protein L19 (L19e) C-terminal domain & Ribosomal protein L19 (L19e) N-terminal domain compare
1JJ2_O_0 1VQ8_P_0 0.99 1.0 0.24 0.98 Ribosomal protein L19 (L19e) C-terminal domain & Ribosomal protein L19 (L19e) N-terminal domain Archaeal large subunit ribosomal RNA compare
1JJ2_O_0 6AZ3_Q_3 0.89 0.72 1.3 0.3 Ribosomal protein L19 (L19e) C-terminal domain & Ribosomal protein L19 (L19e) N-terminal domain compare
1JJ2_O_0 6AZ3_Q_4 0.75 0.78 1.97 0.29 Ribosomal protein L19 (L19e) C-terminal domain compare