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All interfaces > All interologs > Interface groups > group115 > 1YHQ_P_0

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Licorice
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Licorice
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Rim - Core

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1YHQ_P
1YHQ_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
P:1 [THR] 0:1387 [G] 2.78 0:1395 [C] base:BB, base:BB, sugar:SC 0.0
P:1 [THR] 0:1388 [U] 2.89 0:1392 [A] sugar:BB 0.0
P:1 [THR] 0:1395 [C] 4.6 0:1387 [G] 0.0
P:1 [THR] 0:1396 [C] 3.19 0:1386 [G] 0.0
P:2 [ASP] 0:1395 [C] 3.12 0:1387 [G] 0.0
P:2 [ASP] 0:1396 [C] 3.45 0:1386 [G] 0.0
P:2 [ASP] 0:1436 [C] 4.29 0:1430 [G] 0.0
P:2 [ASP] 0:1437 [A] 4.83 0:1429 [U] 0.0
P:3 [LEU] 0:1396 [C] 3.1 0:1386 [G] sugar:BB 0.0
P:3 [LEU] 0:1397 [C] 3.92 0:1385 [G] 0.0
P:4 [SER] 0:1396 [C] 4.05 0:1386 [G] 0.0
P:4 [SER] 0:1397 [C] 4.74 0:1385 [G] 0.0
P:5 [ALA] 0:1422 [U] 3.72 0:1442 [A] 0.0
P:7 [LYS] 0:1397 [C] 2.82 0:1385 [G] 0.0
P:7 [LYS] 0:1398 [G] 3.0 0:1384 [C] 0.0
P:8 [ARG] 0:1421 [C] 4.41 0:1443 [G] 0.0
P:8 [ARG] 0:1422 [U] 4.7 0:1442 [A] 0.0
P:8 [ARG] 0:1501 [A] 3.26 0.0
P:8 [ARG] 0:1502 [A] 2.83 0.0
P:9 [LEU] 0:1501 [A] 3.75 0.0
P:9 [LEU] 0:1502 [A] 3.81 0.0
P:16 [VAL] 0:1718 [G] 4.02 0:1404 [C] 0.0
P:17 [GLY] 0:1718 [G] 3.02 0:1404 [C] 0.0
P:17 [GLY] 0:1719 [G] 3.31 0:1403 [C] 0.0
P:18 [LYS] 0:1718 [G] 4.5 0:1404 [C] 0.0
P:18 [LYS] 0:1719 [G] 2.83 0:1403 [C] 0.0
P:19 [ASN] 0:1719 [G] 3.08 0:1403 [C] 0.0
P:19 [ASN] 0:1720 [C] 3.09 0:1402 [G] 0.0
P:20 [ARG] 0:1717 [A] 4.16 0:1407 [A] 0.0
P:20 [ARG] 0:1718 [G] 2.86 0:1404 [C] 0.0
P:21 [VAL] 0:1398 [G] 3.63 0:1384 [C] 0.0
P:22 [TRP] 0:1398 [G] 3.35 0:1384 [C] 0.0
P:22 [TRP] 0:1399 [A] 3.67 0:1383 [U] 0.0
P:23 [PHE] 0:1397 [C] 3.3 0:1385 [G] 0.0
P:23 [PHE] 0:1398 [G] 2.89 0:1384 [C] 0.0
P:24 [ASN] 0:1397 [C] 4.23 0:1385 [G] 0.0
P:25 [PRO] 0:1397 [C] 3.55 0:1385 [G] 0.0
P:25 [PRO] 0:1398 [G] 3.08 0:1384 [C] 0.0
P:28 [GLN] 0:1386 [G] 3.11 0:1396 [C] base:SC 0.0
P:28 [GLN] 0:1387 [G] 3.23 0:1395 [C] sugar:SC 0.0
P:28 [GLN] 0:1396 [C] 4.13 0:1386 [G] 0.0
P:28 [GLN] 0:1397 [C] 3.44 0:1385 [G] 0.0
P:35 [ILE] 0:1423 [C] 4.64 0:1441 [G] 0.0
P:35 [ILE] 0:1501 [A] 3.99 0.0
P:36 [THR] 0:1501 [A] 3.3 0.0
P:37 [ARG] 0:1500 [U] 3.18 base/AA stacks 0.0
P:37 [ARG] 0:1501 [A] 2.8 0.0
P:37 [ARG] 0:1502 [A] 2.84 0.0
P:38 [GLU] 0:1500 [U] 4.5 0.0
P:38 [GLU] 0:1501 [A] 4.61 0.0
P:41 [ARG] 0:1499 [U] 3.74 0:1504 [A] 0.0
P:41 [ARG] 0:1500 [U] 2.53 0.0
P:52 [LYS] 0:1398 [G] 4.46 0:1384 [C] 0.0
P:52 [LYS] 0:1399 [A] 2.83 0:1383 [U] 0.0
P:53 [ASP] 0:1556 [G] 4.11 0:1565 [C] 0.0
P:53 [ASP] 0:1717 [A] 4.69 0:1407 [A] 0.0
P:54 [LYS] 0:1566 [C] 4.28 0:1555 [G] 0.0
P:54 [LYS] 0:1567 [G] 4.44 0:1554 [C] 0.0
P:54 [LYS] 0:1568 [G] 4.86 0:1553 [C] 0.0
P:54 [LYS] 0:1716 [A] 4.95 0:1405 [U] 0.0
P:54 [LYS] 0:1717 [A] 3.42 0:1407 [A] 0.0
P:54 [LYS] 0:1718 [G] 4.71 0:1404 [C] 0.0
P:55 [LYS] 0:1566 [C] 4.36 0:1555 [G] 0.0
P:55 [LYS] 0:1715 [C] 3.25 0:1703 [G] sugar:SC 0.0
P:55 [LYS] 0:1716 [A] 2.82 0:1405 [U] sugar:BB 0.0
P:55 [LYS] 0:1717 [A] 3.17 0:1407 [A] 0.0
P:55 [LYS] 0:2736 [U] 3.24 0:2743 [A] sugar:SC 0.0
P:55 [LYS] 0:2737 [C] 3.62 0:2742 [G] 0.0
P:56 [GLY] 0:1566 [C] 3.48 0:1555 [G] 0.0
P:56 [GLY] 0:1567 [G] 4.01 0:1554 [C] 0.0
P:56 [GLY] 0:1716 [A] 3.9 0:1405 [U] 0.0
P:56 [GLY] 0:2737 [C] 3.47 0:2742 [G] 0.0
P:57 [ASN] 0:1565 [C] 4.96 0:1556 [G] 0.0
P:57 [ASN] 0:1566 [C] 3.53 0:1555 [G] 0.0
P:57 [ASN] 0:1703 [G] 3.98 0:1715 [C] 0.0
P:57 [ASN] 0:1704 [G] 3.17 0:1714 [C] base:SC 0.0
P:57 [ASN] 0:1715 [C] 2.83 0:1703 [G] base:SC, sugar:SC 0.0
P:57 [ASN] 0:1716 [A] 3.75 0:1405 [U] 0.0
P:57 [ASN] 0:2736 [U] 3.76 0:2743 [A] 0.0
P:57 [ASN] 0:2737 [C] 3.53 0:2742 [G] 0.0
P:58 [SER] 0:1565 [C] 3.26 0:1556 [G] sugar:SC 0.0
P:58 [SER] 0:1566 [C] 3.54 0:1555 [G] 0.0
P:58 [SER] 0:2736 [U] 4.44 0:2743 [A] 0.0
P:58 [SER] 0:2737 [C] 2.89 0:2742 [G] 0.0
P:58 [SER] 0:2738 [G] 3.13 0:1562 [C] 0.0
P:59 [ARG] 0:1548 [U] 3.12 0:1637 [A] 0.0
P:59 [ARG] 0:1549 [C] 3.22 0:1636 [G] 0.0
P:59 [ARG] 0:1565 [C] 3.63 0:1556 [G] 0.0
P:59 [ARG] 0:1566 [C] 2.76 0:1555 [G] 0.0
P:59 [ARG] 0:1704 [G] 2.85 0:1714 [C] 0.0
P:59 [ARG] 0:1705 [C] 2.82 0:1713 [G] 0.0
P:60 [GLY] 0:1565 [C] 3.75 0:1556 [G] 0.0
P:60 [GLY] 0:1566 [C] 4.52 0:1555 [G] 0.0
P:60 [GLY] 0:2738 [G] 4.9 0:1562 [C] 0.0
P:61 [ARG] 0:2736 [U] 3.04 0:2743 [A] base/AA stacks 0.0
P:61 [ARG] 0:2737 [C] 2.5 0:2742 [G] 0.0
P:61 [ARG] 0:2738 [G] 3.4 0:1562 [C] 0.0
P:61 [ARG] 0:2739 [A] 2.78 0:1561 [U] 0.0
P:62 [ALA] 0:1705 [C] 4.06 0:1713 [G] 0.0
P:63 [ARG] 0:1549 [C] 2.94 0:1636 [G] 0.0
P:63 [ARG] 0:1550 [A] 4.94 0:1635 [U] 0.0
P:63 [ARG] 0:1565 [C] 3.17 0:1556 [G] 0.0
P:63 [ARG] 0:1566 [C] 3.13 0:1555 [G] 0.0
P:65 [ARG] 0:1705 [C] 2.8 0:1713 [G] 0.0
P:65 [ARG] 0:1706 [G] 2.88 0:1712 [A] 0.0
P:65 [ARG] 0:2735 [U] 3.29 0:2744 [G] 0.0
P:66 [GLN] 0:1548 [U] 4.67 0:1637 [A] 0.0
P:66 [GLN] 0:1549 [C] 3.93 0:1636 [G] 0.0
P:66 [GLN] 0:1705 [C] 4.47 0:1713 [G] 0.0
P:66 [GLN] 0:1798 [C] 3.44 0.0
P:68 [LYS] 0:1787 [C] 2.97 0:1805 [G] 0.0
P:68 [LYS] 0:1788 [U] 3.61 0:1804 [A] 0.0
P:69 [ARG] 0:1706 [G] 3.58 0:1712 [A] 0.0
P:69 [ARG] 0:1707 [G] 2.99 0:1711 [A] 0.0
P:70 [ALA] 0:1798 [C] 3.37 0.0
P:71 [TYR] 0:1789 [G] 3.44 0:1803 [C] 0.0
P:71 [TYR] 0:1790 [C] 2.77 0:1802 [G] base:BB 0.0
P:71 [TYR] 0:1791 [U] 4.94 0:1801 [A] 0.0
P:72 [GLY] 0:1790 [C] 4.05 0:1802 [G] 0.0
P:72 [GLY] 0:1801 [A] 4.77 0:1791 [U] 0.0
P:72 [GLY] 0:1802 [G] 3.71 0:1790 [C] 0.0
P:73 [HIS] 0:1788 [U] 3.5 0:1804 [A] base/AA stacks 0.0
P:73 [HIS] 0:1789 [G] 2.92 0:1803 [C] base:SC 0.0
P:73 [HIS] 0:1790 [C] 3.95 0:1802 [G] 0.0
P:73 [HIS] 0:1803 [C] 4.85 0:1789 [G] 0.0
P:74 [GLN] 0:1786 [C] 3.02 0:1806 [G] 0.0
P:74 [GLN] 0:1787 [C] 2.86 0:1805 [G] 0.0
P:75 [LYS] 0:1785 [G] 4.79 0:1807 [U] 0.0
P:75 [LYS] 0:1786 [C] 4.88 0:1806 [G] 0.0
P:75 [LYS] 0:1800 [G] 2.79 0:1792 [C] 0.0
P:75 [LYS] 0:1801 [A] 4.58 0:1791 [U] 0.0
P:76 [GLY] 0:1784 [U] 4.45 0:1760 [G] 0.0
P:76 [GLY] 0:1785 [G] 2.98 0:1807 [U] 0.0
P:77 [ALA] 0:1760 [G] 2.78 0:1784 [U] base:BB 0.0
P:77 [ALA] 0:1761 [U] 3.89 0:1783 [A] 0.0
P:77 [ALA] 0:1783 [A] 4.51 0:1761 [U] 0.0
P:77 [ALA] 0:1784 [U] 3.81 0:1760 [G] 0.0
P:77 [ALA] 0:1785 [G] 3.57 0:1807 [U] 0.0
P:78 [GLY] 0:1760 [G] 4.11 0:1784 [U] 0.0
P:78 [GLY] 0:1784 [U] 2.95 0:1760 [G] 0.0
P:78 [GLY] 0:1785 [G] 3.18 0:1807 [U] 0.0
P:78 [GLY] 0:1812 [G] 4.84 0:1808 [C] 0.0
P:78 [GLY] 0:1813 [U] 3.45 0:1817 [U] 0.0
P:78 [GLY] 0:1814 [G] 4.69 0.0
P:79 [SER] 0:1707 [G] 4.17 0:1711 [A] 0.0
P:79 [SER] 0:1760 [G] 4.74 0:1784 [U] 0.0
P:79 [SER] 0:1784 [U] 4.9 0:1760 [G] 0.0
P:79 [SER] 0:1785 [G] 3.9 0:1807 [U] 0.0
P:79 [SER] 0:1786 [C] 4.08 0:1806 [G] 0.0
P:80 [ARG] 0:1707 [G] 4.69 0:1711 [A] 0.0
P:80 [ARG] 0:1708 [C] 4.01 0.0
P:80 [ARG] 0:1760 [G] 2.85 0:1784 [U] base:BB 0.0
P:80 [ARG] 0:1761 [U] 3.83 0:1783 [A] 0.0
P:80 [ARG] 0:1762 [C] 4.61 0:1782 [G] 0.0
P:80 [ARG] 0:1801 [A] 3.65 0:1791 [U] 0.0
P:80 [ARG] 0:1802 [G] 2.81 0:1790 [C] 0.0
P:81 [LYS] 0:1707 [G] 2.94 0:1711 [A] 0.0
P:81 [LYS] 0:1708 [C] 2.99 0.0
P:81 [LYS] 0:1709 [G] 4.8 0.0
P:81 [LYS] 0:1760 [G] 2.7 0:1784 [U] sugar:BB 0.0
P:81 [LYS] 0:1761 [U] 3.36 0:1783 [A] 0.0
P:81 [LYS] 0:1813 [U] 3.37 0:1817 [U] 0.0
P:81 [LYS] 0:1816 [C] 4.61 0.0
P:81 [LYS] 0:1817 [U] 2.55 0:1813 [U] base:SC 0.0
P:82 [GLY] 0:1707 [G] 3.65 0:1711 [A] 0.0
P:82 [GLY] 0:1708 [C] 2.55 0.0
P:82 [GLY] 0:1760 [G] 4.84 0:1784 [U] 0.0
P:82 [GLY] 0:1761 [U] 3.37 0:1783 [A] 0.0
P:83 [LYS] 0:792 [G] 3.97 0:822 [C] 0.0
P:83 [LYS] 0:793 [A] 3.52 0:821 [U] 0.0
P:83 [LYS] 0:1708 [C] 4.59 0.0
P:83 [LYS] 0:1761 [U] 3.69 0:1783 [A] 0.0
P:83 [LYS] 0:1762 [C] 3.2 0:1782 [G] 0.0
P:84 [ALA] 0:793 [A] 4.68 0:821 [U] 0.0
P:84 [ALA] 0:1761 [U] 3.87 0:1783 [A] 0.0
P:84 [ALA] 0:1762 [C] 2.92 0:1782 [G] 0.0
P:85 [GLY] 0:792 [G] 4.34 0:822 [C] 0.0
P:85 [GLY] 0:793 [A] 3.08 0:821 [U] 0.0
P:86 [ALA] 0:792 [G] 3.33 0:822 [C] 0.0
P:86 [ALA] 0:793 [A] 3.4 0:821 [U] 0.0
P:86 [ALA] 0:1708 [C] 3.37 0.0
P:87 [ARG] 0:1707 [G] 4.56 0:1711 [A] 0.0
P:87 [ARG] 0:1708 [C] 2.83 0.0
P:87 [ARG] 0:1799 [G] 3.93 0:1793 [C] sugar:BB 0.0
P:87 [ARG] 0:1800 [G] 3.28 0:1792 [C] 0.0
P:87 [ARG] 0:1801 [A] 2.86 0:1791 [U] 0.0
P:88 [GLN] 0:1793 [C] 4.89 0:1799 [G] 0.0
P:88 [GLN] 0:1799 [G] 3.13 0:1793 [C] base:SC 0.0
P:88 [GLN] 0:1800 [G] 3.5 0:1792 [C] 0.0
P:90 [SER] 0:815 [U] 4.69 0:798 [G] 0.0
P:91 [LYS] 0:816 [G] 2.58 0:797 [A] 0.0
P:91 [LYS] 0:817 [G] 3.04 0:796 [A] 0.0
P:91 [LYS] 0:1539 [U] 4.03 0:1646 [G] 0.0
P:91 [LYS] 0:1597 [A] 3.02 base:SC 0.0
P:91 [LYS] 0:1598 [A] 4.91 0.0
P:93 [ASP] 0:1793 [C] 4.66 0:1799 [G] 0.0
P:93 [ASP] 0:1799 [G] 4.93 0:1793 [C] 0.0
P:94 [TRP] 0:814 [G] 4.1 0:799 [C] 0.0
P:94 [TRP] 0:815 [U] 3.51 0:798 [G] 0.0
P:94 [TRP] 0:816 [G] 4.03 0:797 [A] 0.0
P:94 [TRP] 0:1597 [A] 3.09 sugar:SC 0.0
P:94 [TRP] 0:1598 [A] 3.34 0.0
P:95 [GLU] 0:1539 [U] 4.34 0:1646 [G] 0.0
P:95 [GLU] 0:1540 [G] 3.77 0:1645 [U] 0.0
P:95 [GLU] 0:1597 [A] 3.26 0.0
P:96 [SER] 0:1794 [G] 3.0 0:1797 [A] sugar:SC 0.0
P:96 [SER] 0:1795 [G] 4.82 0.0
P:96 [SER] 0:1796 [A] 3.83 base:SC 0.0
P:97 [ARG] 0:815 [U] 4.76 0:798 [G] 0.0
P:97 [ARG] 0:1793 [C] 3.69 0:1799 [G] 0.0
P:97 [ARG] 0:1794 [G] 4.11 0:1797 [A] 0.0
P:98 [ILE] 0:1597 [A] 3.77 0.0
P:98 [ILE] 0:1598 [A] 4.51 0.0
P:99 [ARG] 0:1540 [G] 2.96 0:1645 [U] 0.0
P:99 [ARG] 0:1541 [G] 3.25 0:1644 [C] 0.0
P:99 [ARG] 0:1597 [A] 2.68 0.0
P:100 [ALA] 0:1794 [G] 3.8 0:1797 [A] 0.0
P:100 [ALA] 0:1795 [G] 3.39 0.0
P:102 [ARG] 0:1596 [U] 3.1 base/AA stacks 0.0
P:102 [ARG] 0:1597 [A] 3.15 0.0
P:102 [ARG] 0:1598 [A] 2.78 0.0
P:106 [ARG] 0:1596 [U] 3.94 0.0
P:109 [ARG] 0:1594 [C] 2.64 0:1600 [G] 0.0
P:109 [ARG] 0:1595 [G] 3.25 0.0
P:116 [SER] 0:1593 [C] 3.84 0:1601 [G] 0.0
P:116 [SER] 0:1594 [C] 3.72 0:1600 [G] 0.0
P:117 [SER] 0:1592 [G] 4.91 0:1602 [C] 0.0
P:117 [SER] 0:1593 [C] 2.63 0:1601 [G] 0.0
P:119 [TYR] 0:1594 [C] 3.11 0:1600 [G] 0.0
P:119 [TYR] 0:1595 [G] 2.77 0.0
P:120 [ARG] 0:1593 [C] 3.83 0:1601 [G] base/AA stacks 0.0
P:120 [ARG] 0:1594 [C] 2.97 0:1600 [G] base/AA stacks 0.0
P:120 [ARG] 0:1595 [G] 2.87 base:SC, base:SC 0.0
P:121 [ASP] 0:802 [G] 4.64 0:811 [C] 0.0
P:123 [TYR] 0:1595 [G] 3.26 0.0
P:123 [TYR] 0:1596 [U] 2.63 0.0
P:124 [ASP] 0:800 [G] 4.13 0:813 [C] 0.0
P:124 [ASP] 0:801 [U] 3.23 0:812 [A] 0.0
P:124 [ASP] 0:1595 [G] 3.92 0.0
P:125 [LYS] 0:801 [U] 3.9 0:812 [A] 0.0
P:125 [LYS] 0:802 [G] 3.71 0:811 [C] 0.0
P:127 [GLY] 0:800 [G] 3.75 0:813 [C] 0.0
P:127 [GLY] 0:1598 [A] 4.96 0.0
P:128 [GLY] 0:800 [G] 3.14 0:813 [C] base:BB 0.0
P:128 [GLY] 0:801 [U] 3.2 0:812 [A] 0.0
P:128 [GLY] 0:813 [C] 4.56 0:800 [G] 0.0
P:128 [GLY] 0:814 [G] 4.49 0:799 [C] 0.0
P:129 [GLY] 0:813 [C] 4.94 0:800 [G] 0.0
P:129 [GLY] 0:814 [G] 4.14 0:799 [C] 0.0
P:130 [GLU] 0:801 [U] 2.66 0:812 [A] sugar:SC 0.0
P:130 [GLU] 0:802 [G] 3.33 0:811 [C] 0.0
P:132 [ASP] 0:1793 [C] 4.7 0:1799 [G] 0.0
P:133 [SER] 0:1793 [C] 3.27 0:1799 [G] 0.0
P:133 [SER] 0:1794 [G] 3.43 0:1797 [A] 0.0
P:134 [VAL] 0:1793 [C] 4.71 0:1799 [G] 0.0
P:134 [VAL] 0:1794 [G] 3.06 0:1797 [A] 0.0
P:134 [VAL] 0:1795 [G] 4.73 0.0
P:135 [ALA] 0:1793 [C] 3.58 0:1799 [G] 0.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group115 1YHQ_P_0 P: 50s ribosomal protein l19e, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P14119 Ribosomal protein L19 (L19e) C-terminal domain & Ribosomal protein L19 (L19e) N-terminal domain Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_O_0 1YHQ_P_0 1.00 1.0 0.13 0.98 Ribosomal protein L19 (L19e) C-terminal domain & Ribosomal protein L19 (L19e) N-terminal domain Archaeal large subunit ribosomal RNA compare
1VQ8_P_0 1YHQ_P_0 1.00 1.0 0.2 0.99 Ribosomal protein L19 (L19e) C-terminal domain & Ribosomal protein L19 (L19e) N-terminal domain Archaeal large subunit ribosomal RNA compare
1YHQ_P_0 6AZ3_Q_1 0.79 0.76 1.57 0.35 Ribosomal protein L19 (L19e) C-terminal domain & Ribosomal protein L19 (L19e) N-terminal domain compare
1YHQ_P_0 6AZ3_Q_2 0.73 0.8 1.55 0.26 Ribosomal protein L19 (L19e) C-terminal domain & Ribosomal protein L19 (L19e) N-terminal domain compare
1YHQ_P_0 6AZ3_Q_3 0.90 0.72 1.32 0.26 Ribosomal protein L19 (L19e) C-terminal domain & Ribosomal protein L19 (L19e) N-terminal domain compare
1YHQ_P_0 6AZ3_Q_4 0.74 0.78 2.01 0.29 Ribosomal protein L19 (L19e) C-terminal domain compare
1YHQ_P_0 7O7Y_BR_B5 0.83 0.94 1.43 0.34 Ribosomal protein L19 (L19e) C-terminal domain & Ribosomal protein L19 (L19e) N-terminal domain compare