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All interfaces > All interologs > Interface groups > group115 > 6AZ3_Q_1

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Licorice
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Licorice
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Chain
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6AZ3_Q
6AZ3_1
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
Q:2 [VAL] 1:1555 [G] 3.33 1:1576 [C] 60.8
Q:2 [VAL] 1:1577 [G] 3.31 1:1554 [C] 60.8
Q:2 [VAL] 1:1578 [U] 2.7 1:1553 [A] sugar:BB 60.8
Q:3 [SER] 1:1577 [G] 4.96 1:1554 [C] 62.1
Q:3 [SER] 1:1578 [U] 3.98 1:1553 [A] 62.1
Q:4 [LEU] 1:1578 [U] 3.29 1:1553 [A] sugar:BB 63.8
Q:4 [LEU] 1:1579 [U] 3.9 1:1552 [A] 63.8
Q:5 [LYS] 1:1578 [U] 4.47 1:1553 [A] 46.1
Q:5 [LYS] 1:1579 [U] 4.58 1:1552 [A] 46.1
Q:5 [LYS] 1:1620 [G] 3.96 1:1612 [C] 46.1
Q:6 [LEU] 1:1604 [C] 4.99 1:1626 [G] 46.2
Q:6 [LEU] 1:1605 [G] 3.36 1:1625 [C] 46.2
Q:6 [LEU] 1:1606 [U] 4.82 1:1624 [A] 46.2
Q:6 [LEU] 1:1755 [U] 4.41 46.2
Q:8 [ALA] 1:1579 [U] 4.14 1:1552 [A] 79.0
Q:9 [ARG] 1:1604 [C] 3.8 1:1626 [G] 80.3
Q:9 [ARG] 1:1605 [G] 3.5 1:1625 [C] 80.3
Q:9 [ARG] 1:1755 [U] 3.0 sugar:SC 80.3
Q:9 [ARG] 1:1756 [A] 3.24 80.3
Q:10 [LEU] 1:1755 [U] 3.7 73.4
Q:10 [LEU] 1:1756 [A] 3.59 73.4
Q:13 [SER] 1:1756 [A] 4.95 34.9
Q:19 [ARG] 1:1579 [U] 3.36 1:1552 [A] 33.8
Q:19 [ARG] 1:1580 [G] 3.12 1:1551 [U] 33.8
Q:22 [VAL] 1:1580 [G] 3.3 1:1551 [U] 85.2
Q:23 [TRP] 1:1580 [G] 3.11 1:1551 [U] 41.7
Q:23 [TRP] 1:1581 [G] 3.59 1:1550 [C] 41.7
Q:24 [LEU] 1:1579 [U] 3.27 1:1552 [A] 64.7
Q:24 [LEU] 1:1580 [G] 3.24 1:1551 [U] 64.7
Q:25 [ASP] 1:1579 [U] 4.05 1:1552 [A] 78.8
Q:26 [PRO] 1:1579 [U] 3.43 1:1552 [A] 79.8
Q:26 [PRO] 1:1580 [G] 3.54 1:1551 [U] 79.8
Q:36 [ASN] 1:1606 [U] 4.19 1:1624 [A] 78.0
Q:36 [ASN] 1:1755 [U] 3.7 78.0
Q:37 [SER] 1:1755 [U] 3.59 95.7
Q:38 [ARG] 1:1754 [U] 3.54 base/AA stacks 83.1
Q:38 [ARG] 1:1755 [U] 2.98 83.1
Q:38 [ARG] 1:1756 [A] 2.61 83.1
Q:39 [LYS] 1:1755 [U] 4.84 49.6
Q:42 [ARG] 1:1752 [G] 3.06 base/AA stacks 81.2
Q:42 [ARG] 1:1754 [U] 4.69 81.2
Q:53 [LYS] 1:1580 [G] 4.98 1:1551 [U] 53.0
Q:53 [LYS] 1:1581 [G] 3.26 1:1550 [C] 53.0
Q:56 [LYS] 1:1585 [C] 4.76 2:58 [G] 59.1
Q:84 [SER] 1:883 [G] 3.78 1:913 [C] 67.6
Q:84 [SER] 1:884 [G] 3.39 1:912 [C] 67.6
Q:86 [GLU] 1:884 [G] 3.32 1:912 [C] 48.9
Q:86 [GLU] 1:886 [G] 4.81 1:909 [A] 48.9
Q:87 [ALA] 1:883 [G] 3.72 1:913 [C] 86.1
Q:87 [ALA] 1:884 [G] 3.98 1:912 [C] 86.1
Q:91 [SER] 1:906 [U] 3.93 1:889 [G] 25.8
Q:92 [LYS] 1:907 [G] 3.39 1:888 [A] 90.6
Q:92 [LYS] 1:908 [G] 3.25 1:887 [A] 90.6
Q:95 [TRP] 1:905 [G] 3.8 1:890 [C] 79.7
Q:95 [TRP] 1:906 [U] 3.49 1:889 [G] 79.7
Q:95 [TRP] 1:907 [G] 3.82 1:888 [A] 79.7
Q:96 [MET] 1:907 [G] 4.71 1:888 [A] 75.3
Q:98 [ARG] 1:905 [G] 4.78 1:890 [C] 71.7
Q:125 [VAL] 1:891 [C] 2.42 1:904 [G] sugar:BB 32.7
Q:125 [VAL] 1:892 [C] 3.7 1:903 [A] 32.7
Q:126 [ARG] 1:891 [C] 4.63 1:904 [G] 52.2
Q:126 [ARG] 1:892 [C] 3.96 1:903 [A] 52.2
Q:128 [LYS] 1:890 [C] 3.9 1:905 [G] 87.3
Q:128 [LYS] 1:891 [C] 3.36 1:904 [G] sugar:SC 87.3
Q:128 [LYS] 1:905 [G] 4.5 1:890 [C] 87.3
Q:129 [GLY] 1:891 [C] 3.3 1:904 [G] 86.3
Q:129 [GLY] 1:892 [C] 3.7 1:903 [A] 86.3
Q:129 [GLY] 1:904 [G] 2.97 1:891 [C] base:BB 86.3
Q:130 [ASN] 1:904 [G] 3.93 1:891 [C] 83.0
Q:130 [ASN] 1:905 [G] 3.22 1:890 [C] 83.0
Q:131 [VAL] 1:892 [C] 3.3 1:903 [A] 1.2

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group115 6AZ3_Q_1 Q: Ribosomal protein l19e family protein, Leishmania donovani (natural) 1: rRNA alpha, Leishmania donovani (natural) A0A504XXD2 Ribosomal protein L19 (L19e) C-terminal domain & Ribosomal protein L19 (L19e) N-terminal domain Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_O_0 6AZ3_Q_1 0.79 0.76 1.54 0.35 Ribosomal protein L19 (L19e) C-terminal domain & Ribosomal protein L19 (L19e) N-terminal domain compare
1YHQ_P_0 6AZ3_Q_1 0.79 0.76 1.57 0.35 Ribosomal protein L19 (L19e) C-terminal domain & Ribosomal protein L19 (L19e) N-terminal domain compare
1VQ8_P_0 6AZ3_Q_1 0.79 0.76 1.53 0.35 Ribosomal protein L19 (L19e) C-terminal domain & Ribosomal protein L19 (L19e) N-terminal domain compare
6AZ3_Q_1 7O7Y_BR_B5 0.85 0.92 0.84 0.61 Ribosomal protein L19 (L19e) C-terminal domain & Ribosomal protein L19 (L19e) N-terminal domain Eukaryotic large subunit ribosomal RNA compare