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All interfaces > All interologs > Interface groups > group115 > 6AZ3_Q_2

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Licorice
Surface

RNA

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Licorice
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Chain
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Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6AZ3_Q
6AZ3_2
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
Q:17 [CYS] 2:56 [U] 4.44 1:1590 [G] 79.15
Q:17 [CYS] 2:57 [G] 2.83 1:1586 [U] 79.15
Q:18 [GLY] 2:57 [G] 3.45 1:1586 [U] 96.79
Q:18 [GLY] 2:58 [G] 3.73 1:1585 [C] 96.79
Q:19 [ARG] 2:57 [G] 4.96 1:1586 [U] 33.86
Q:19 [ARG] 2:58 [G] 3.35 1:1585 [C] 33.86
Q:20 [ALA] 2:58 [G] 4.1 1:1585 [C] 62.76
Q:21 [ARG] 2:56 [U] 4.34 1:1590 [G] 89.0
Q:21 [ARG] 2:57 [G] 3.59 1:1586 [U] 89.0
Q:55 [VAL] 2:55 [C] 4.25 1:1588 [G] 17.21
Q:55 [VAL] 2:56 [U] 3.72 1:1590 [G] 17.21
Q:56 [LYS] 2:55 [C] 2.88 1:1588 [G] sugar:BB 59.11
Q:56 [LYS] 2:56 [U] 3.14 1:1590 [G] 59.11
Q:57 [VAL] 2:54 [U] 5.0 2:42 [A] 61.78
Q:57 [VAL] 2:55 [C] 3.95 1:1588 [G] 61.78
Q:58 [HIS] 2:43 [G] 3.86 2:53 [C] 53.09
Q:58 [HIS] 2:54 [U] 3.71 2:42 [A] 53.09
Q:58 [HIS] 2:55 [C] 3.37 1:1588 [G] 53.09
Q:60 [ARG] 2:43 [G] 3.14 2:53 [C] 77.09
Q:60 [ARG] 2:44 [C] 3.26 2:52 [G] 77.09
Q:63 [TRP] 2:44 [C] 3.45 2:52 [G] 49.62
Q:63 [TRP] 2:45 [A] 3.78 2:51 [U] 49.62
Q:67 [LYS] 2:349 [C] 3.42 2:131 [G] 30.91
Q:70 [LYS] 2:45 [A] 3.77 2:51 [U] 71.72
Q:70 [LYS] 2:46 [U] 3.8 2:50 [A] 71.72
Q:70 [LYS] 2:350 [U] 4.65 2:130 [A] 71.72
Q:71 [ASP] 2:349 [C] 4.43 2:131 [G] 37.63
Q:72 [MET] 2:127 [C] 4.8 2:353 [G] 66.97
Q:73 [GLY] 2:127 [C] 4.82 2:353 [G] 84.67
Q:74 [ARG] 2:124 [G] 3.7 2:356 [C] 82.25
Q:74 [ARG] 2:125 [C] 3.12 2:355 [A] 82.25
Q:74 [ARG] 2:126 [U] 2.73 2:354 [A] 82.25
Q:74 [ARG] 2:127 [C] 3.73 2:353 [G] 82.25
Q:75 [HIS] 2:124 [G] 3.11 2:356 [C] 85.36
Q:75 [HIS] 2:125 [C] 3.49 2:355 [A] 85.36
Q:76 [ASN] 2:350 [U] 4.51 2:130 [A] 59.61
Q:76 [ASN] 2:351 [C] 4.09 2:129 [G] 59.61
Q:77 [GLY] 2:122 [U] 4.66 2:98 [G] 90.55
Q:77 [GLY] 2:123 [G] 3.22 2:357 [U] 90.55
Q:78 [VAL] 2:98 [G] 2.87 2:122 [U] base:BB 1.19
Q:78 [VAL] 2:99 [A] 4.21 2:121 [U] 1.19
Q:78 [VAL] 2:100 [U] 4.9 2:120 [A] 1.19
Q:78 [VAL] 2:121 [U] 4.27 2:99 [A] 1.19
Q:78 [VAL] 2:122 [U] 3.93 2:98 [G] 1.19
Q:78 [VAL] 2:123 [G] 3.24 2:357 [U] 1.19
Q:79 [GLY] 2:98 [G] 3.37 2:122 [U] 98.74
Q:79 [GLY] 2:122 [U] 2.91 2:98 [G] 98.74
Q:79 [GLY] 2:123 [G] 3.22 2:357 [U] 98.74
Q:80 [ARG] 2:46 [U] 4.14 2:50 [A] 79.71
Q:80 [ARG] 2:47 [A] 5.0 79.71
Q:80 [ARG] 2:98 [G] 4.69 2:122 [U] 79.71
Q:80 [ARG] 2:122 [U] 4.76 2:98 [G] 79.71
Q:80 [ARG] 2:123 [G] 3.69 2:357 [U] 79.71
Q:80 [ARG] 2:124 [G] 2.73 2:356 [C] 79.71
Q:81 [ARG] 2:47 [A] 4.23 87.24
Q:81 [ARG] 2:98 [G] 2.44 2:122 [U] base:BB 87.24
Q:81 [ARG] 2:99 [A] 4.07 2:121 [U] 87.24
Q:81 [ARG] 2:351 [C] 3.29 2:129 [G] 87.24
Q:81 [ARG] 2:352 [A] 2.69 2:128 [U] 87.24
Q:82 [GLU] 2:46 [U] 3.29 2:50 [A] 77.76
Q:82 [GLU] 2:47 [A] 3.19 77.76
Q:82 [GLU] 2:98 [G] 2.28 2:122 [U] sugar:BB 77.76
Q:82 [GLU] 2:99 [A] 3.89 2:121 [U] 77.76
Q:82 [GLU] 2:364 [G] 3.55 77.76
Q:82 [GLU] 2:365 [G] 3.06 base:SC 77.76
Q:83 [GLY] 2:46 [U] 3.84 2:50 [A] 95.36
Q:83 [GLY] 2:47 [A] 2.81 95.36
Q:83 [GLY] 2:98 [G] 4.51 2:122 [U] 95.36
Q:83 [GLY] 2:99 [A] 3.38 2:121 [U] 95.36
Q:84 [SER] 2:47 [A] 4.48 67.66
Q:84 [SER] 2:99 [A] 3.59 2:121 [U] 67.66
Q:84 [SER] 2:100 [U] 3.72 2:120 [A] 67.66
Q:85 [ARG] 2:99 [A] 3.68 2:121 [U] 37.82
Q:85 [ARG] 2:100 [U] 2.82 2:120 [A] 37.82
Q:85 [ARG] 2:101 [G] 4.27 2:119 [C] 37.82
Q:85 [ARG] 2:351 [C] 3.57 2:129 [G] 37.82
Q:85 [ARG] 2:352 [A] 3.36 2:128 [U] 37.82
Q:86 [GLU] 2:100 [U] 4.69 2:120 [A] 48.93
Q:87 [ALA] 2:47 [A] 3.69 86.17
Q:88 [ARG] 2:46 [U] 4.79 2:50 [A] 93.0
Q:88 [ARG] 2:47 [A] 2.76 93.0
Q:88 [ARG] 2:350 [U] 4.44 2:130 [A] 93.0
Q:88 [ARG] 2:351 [C] 2.85 2:129 [G] 93.0
Q:89 [MET] 2:350 [U] 2.86 2:130 [A] 12.73
Q:89 [MET] 2:351 [C] 3.73 2:129 [G] 12.73
Q:97 [ARG] 2:131 [G] 4.63 2:349 [C] 37.23
Q:101 [ILE] 2:132 [G] 3.74 2:346 [C] 73.66
Q:101 [ILE] 2:133 [G] 3.89 2:345 [C] 73.66
Q:104 [ARG] 2:132 [G] 4.45 2:346 [C] 41.58
Q:104 [ARG] 2:133 [G] 3.36 2:345 [C] 41.58
Q:104 [ARG] 2:134 [C] 3.86 2:344 [G] 41.58
Q:109 [TYR] 2:341 [A] 3.5 69.52
Q:114 [LYS] 2:340 [A] 3.54 sugar:SC 48.75
Q:114 [LYS] 2:341 [A] 3.37 48.75
Q:134 [ASN] 2:130 [A] 4.09 2:350 [U] 80.84
Q:134 [ASN] 2:131 [G] 3.27 2:349 [C] 80.84
Q:134 [ASN] 2:132 [G] 3.68 2:346 [C] 80.84
Q:135 [LYS] 2:131 [G] 4.86 2:349 [C] 59.23
Q:135 [LYS] 2:132 [G] 2.89 2:346 [C] 59.23
Q:135 [LYS] 2:133 [G] 3.34 2:345 [C] 59.23
Q:136 [ARG] 2:130 [A] 3.78 2:350 [U] 64.09
Q:136 [ARG] 2:131 [G] 3.57 2:349 [C] 64.09
Q:136 [ARG] 2:132 [G] 4.92 2:346 [C] 64.09
Q:143 [HIS] 2:341 [A] 3.1 base:BB base/AA stacks 37.94
Q:146 [LYS] 2:341 [A] 4.35 42.78
Q:147 [ASN] 2:339 [A] 3.53 22.18
Q:147 [ASN] 2:341 [A] 2.99 base:SC, base:SC 22.18

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group115 6AZ3_Q_2 Q: Ribosomal protein l19e family protein, Leishmania donovani (natural) 2: rRNA beta, Leishmania donovani (natural) A0A504XXD2 Ribosomal protein L19 (L19e) C-terminal domain & Ribosomal protein L19 (L19e) N-terminal domain Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_O_0 6AZ3_Q_2 0.74 0.8 1.53 0.26 Ribosomal protein L19 (L19e) C-terminal domain & Ribosomal protein L19 (L19e) N-terminal domain compare
1YHQ_P_0 6AZ3_Q_2 0.73 0.8 1.55 0.26 Ribosomal protein L19 (L19e) C-terminal domain & Ribosomal protein L19 (L19e) N-terminal domain compare
1VQ8_P_0 6AZ3_Q_2 0.73 0.8 1.52 0.26 Ribosomal protein L19 (L19e) C-terminal domain & Ribosomal protein L19 (L19e) N-terminal domain compare
6AZ3_Q_2 7O7Y_BR_B5 0.86 0.91 0.73 0.58 Ribosomal protein L19 (L19e) C-terminal domain & Ribosomal protein L19 (L19e) N-terminal domain Eukaryotic large subunit ribosomal RNA compare