Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 6AZ3_Q
|
6AZ3_3
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| Q:38 [ARG] | 3:163 [C] | 4.93 | 83.1 | |||
| Q:39 [LYS] | 3:163 [C] | 3.58 | 49.6 | |||
| Q:42 [ARG] | 3:163 [C] | 2.51 | base:SC, base:SC | 81.2 | ||
| Q:43 [LYS] | 3:163 [C] | 3.27 | 39.1 | |||
| Q:46 [LYS] | 3:162 [A] | 4.1 | 3:157 [U] | 44.8 | ||
| Q:46 [LYS] | 3:163 [C] | 3.63 | 44.8 | |||
| Q:46 [LYS] | 3:164 [G] | 3.02 | 3:156 [C] | base:SC | 44.8 | |
| Q:52 [ARG] | 3:151 [C] | 4.29 | 3:169 [G] | 44.5 | ||
| Q:52 [ARG] | 3:152 [A] | 2.11 | 3:168 [U] | 44.5 | ||
| Q:54 [PRO] | 3:52 [A] | 4.13 | 3:62 [U] | 43.3 | ||
| Q:55 [VAL] | 3:63 [C] | 4.14 | 3:51 [G] | 17.2 | ||
| Q:55 [VAL] | 3:64 [A] | 4.02 | 3:50 [U] | 17.2 | ||
| Q:56 [LYS] | 3:63 [C] | 4.55 | 3:51 [G] | 59.1 | ||
| Q:57 [VAL] | 3:62 [U] | 4.09 | 3:52 [A] | 61.7 | ||
| Q:57 [VAL] | 3:63 [C] | 4.06 | 3:51 [G] | 61.7 | ||
| Q:58 [HIS] | 3:63 [C] | 3.31 | 3:51 [G] | 53.0 | ||
| Q:59 [SER] | 3:62 [U] | 2.4 | 3:52 [A] | sugar:SC | 95.6 | |
| Q:59 [SER] | 3:63 [C] | 3.89 | 3:51 [G] | 95.6 | ||
| Q:60 [ARG] | 3:44 [C] | 3.44 | 3:178 [G] | 77.0 | ||
| Q:60 [ARG] | 3:45 [C] | 3.04 | 3:177 [U] | 77.0 | ||
| Q:60 [ARG] | 3:62 [U] | 3.88 | 3:52 [A] | 77.0 | ||
| Q:60 [ARG] | 3:63 [C] | 3.26 | 3:51 [G] | 77.0 | ||
| Q:61 [ALA] | 3:62 [U] | 3.58 | 3:52 [A] | 34.7 | ||
| Q:61 [ALA] | 3:63 [C] | 4.78 | 3:51 [G] | 34.7 | ||
| Q:63 [TRP] | 3:44 [C] | 3.7 | 3:178 [G] | 49.6 | ||
| Q:63 [TRP] | 3:45 [C] | 3.55 | 3:177 [U] | 49.6 | ||
| Q:64 [ARG] | 3:45 [C] | 3.12 | 3:177 [U] | 73.1 | ||
| Q:64 [ARG] | 3:62 [U] | 2.95 | 3:52 [A] | 73.1 | ||
| Q:64 [ARG] | 3:63 [C] | 3.09 | 3:51 [G] | 73.1 | ||
| Q:67 [LYS] | 3:45 [C] | 4.33 | 3:177 [U] | 30.9 | ||
| Q:92 [LYS] | 3:35 [U] | 3.66 | 3:119 [U] | 90.6 | ||
| Q:92 [LYS] | 3:36 [C] | 3.56 | 3:187 [G] | 90.6 | ||
| Q:92 [LYS] | 3:119 [U] | 2.64 | 3:35 [U] | base:SC | 90.6 | |
| Q:93 [GLU] | 3:36 [C] | 4.43 | 3:187 [G] | 30.3 | ||
| Q:93 [GLU] | 3:37 [A] | 4.78 | 3:186 [U] | 30.3 | ||
| Q:95 [TRP] | 3:119 [U] | 3.43 | 3:35 [U] | sugar:SC | 79.7 | |
| Q:95 [TRP] | 3:120 [G] | 4.79 | 3:34 [A] | 79.7 | ||
| Q:96 [MET] | 3:36 [C] | 3.58 | 3:187 [G] | 75.3 | ||
| Q:96 [MET] | 3:37 [A] | 4.3 | 3:186 [U] | 75.3 | ||
| Q:96 [MET] | 3:119 [U] | 3.34 | 3:35 [U] | 75.3 | ||
| Q:99 [LEU] | 3:119 [U] | 3.28 | 3:35 [U] | 81.2 | ||
| Q:99 [LEU] | 3:120 [G] | 3.53 | 3:34 [A] | 81.2 | ||
| Q:100 [ARG] | 3:36 [C] | 3.22 | 3:187 [G] | sugar:SC | 99.0 | |
| Q:100 [ARG] | 3:37 [A] | 3.24 | 3:186 [U] | 99.0 | ||
| Q:100 [ARG] | 3:119 [U] | 2.93 | 3:35 [U] | 99.0 | ||
| Q:103 [ARG] | 3:118 [U] | 3.64 | base/AA stacks | 98.9 | ||
| Q:103 [ARG] | 3:119 [U] | 2.81 | 3:35 [U] | 98.9 | ||
| Q:103 [ARG] | 3:120 [G] | 2.62 | 3:34 [A] | 98.9 | ||
| Q:107 [ARG] | 3:117 [G] | 4.29 | 59.5 | |||
| Q:107 [ARG] | 3:118 [U] | 2.87 | 59.5 | |||
| Q:110 [ARG] | 3:116 [C] | 3.02 | 3:122 [U] | 78.7 | ||
| Q:110 [ARG] | 3:117 [G] | 2.81 | 78.7 | |||
| Q:117 [ARG] | 3:109 [C] | 3.83 | 20.2 | |||
| Q:117 [ARG] | 3:115 [G] | 3.62 | 3:123 [C] | 20.2 | ||
| Q:117 [ARG] | 3:116 [C] | 3.79 | 3:122 [U] | 20.2 | ||
| Q:118 [HIS] | 3:114 [C] | 4.21 | 3:124 [G] | 46.7 | ||
| Q:118 [HIS] | 3:115 [G] | 3.07 | 3:123 [C] | 46.7 | ||
| Q:120 [TYR] | 3:116 [C] | 3.59 | 3:122 [U] | 76.8 | ||
| Q:120 [TYR] | 3:117 [G] | 2.97 | 76.8 | |||
| Q:121 [ARG] | 3:115 [G] | 3.5 | 3:123 [C] | 82.4 | ||
| Q:121 [ARG] | 3:116 [C] | 2.42 | 3:122 [U] | base/AA stacks | 82.4 | |
| Q:121 [ARG] | 3:117 [G] | 3.29 | base:SC, base:SC | 82.4 | ||
| Q:124 [TYR] | 3:117 [G] | 3.52 | base/AA stacks | 86.5 | ||
| Q:124 [TYR] | 3:118 [U] | 2.11 | 86.5 | |||
| Q:125 [VAL] | 3:117 [G] | 4.91 | 32.7 | |||
| Q:128 [LYS] | 3:118 [U] | 3.28 | 87.3 | |||
| Q:128 [LYS] | 3:120 [G] | 3.25 | 3:34 [A] | 87.3 | ||
| Q:128 [LYS] | 3:121 [U] | 3.06 | 87.3 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group115 | 6AZ3_Q_3 | Q: Ribosomal protein l19e family protein, Leishmania donovani (natural) 3: rRNA gamma, Leishmania donovani (natural) | A0A504XXD2 | Ribosomal protein L19 (L19e) C-terminal domain & Ribosomal protein L19 (L19e) N-terminal domain | ✔ |
|
Interologs
Total number of interologs for this interface: 4