Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 6AZ3_Q
|
6AZ3_4
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| Q:57 [VAL] | 4:95 [U] | 4.58 | 4:102 [G] | 61.7 | ||
| Q:57 [VAL] | 4:96 [C] | 3.4 | 4:101 [G] | 61.7 | ||
| Q:57 [VAL] | 4:97 [G] | 3.47 | 3:58 [C] | 61.7 | ||
| Q:58 [HIS] | 4:95 [U] | 2.98 | 4:102 [G] | 53.0 | ||
| Q:58 [HIS] | 4:96 [C] | 3.31 | 4:101 [G] | 53.0 | ||
| Q:59 [SER] | 4:95 [U] | 4.88 | 4:102 [G] | 95.6 | ||
| Q:59 [SER] | 4:96 [C] | 2.8 | 4:101 [G] | 95.6 | ||
| Q:59 [SER] | 4:97 [G] | 3.3 | 3:58 [C] | 95.6 | ||
| Q:61 [ALA] | 4:97 [G] | 3.3 | 3:58 [C] | 34.7 | ||
| Q:62 [ARG] | 4:94 [G] | 4.82 | 4:103 [C] | 82.9 | ||
| Q:62 [ARG] | 4:95 [U] | 2.79 | 4:102 [G] | base/AA stacks | 82.9 | |
| Q:62 [ARG] | 4:96 [C] | 2.79 | 4:101 [G] | 82.9 | ||
| Q:62 [ARG] | 4:97 [G] | 4.09 | 3:58 [C] | 82.9 | ||
| Q:62 [ARG] | 4:98 [A] | 3.28 | 3:57 [U] | 82.9 | ||
| Q:65 [LYS] | 4:98 [A] | 4.46 | 3:57 [U] | 5.2 | ||
| Q:80 [ARG] | 4:92 [U] | 4.59 | 4:105 [A] | 79.7 | ||
| Q:80 [ARG] | 4:93 [U] | 3.34 | 4:104 [A] | 79.7 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group115 | 6AZ3_Q_4 | Q: Ribosomal protein l19e family protein, Leishmania donovani (natural) 4: rRNA delta, Leishmania donovani (natural) | A0A504XXD2 | Ribosomal protein L19 (L19e) C-terminal domain | Eukaryotic large subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 4
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 1JJ2_O_0 | 6AZ3_Q_4 | 0.75 | 0.78 | 1.97 | 0.29 | Ribosomal protein L19 (L19e) C-terminal domain | compare | |
| 1YHQ_P_0 | 6AZ3_Q_4 | 0.74 | 0.78 | 2.01 | 0.29 | Ribosomal protein L19 (L19e) C-terminal domain | compare | |
| 1VQ8_P_0 | 6AZ3_Q_4 | 0.72 | 0.78 | 2.0 | 0.29 | Ribosomal protein L19 (L19e) C-terminal domain | compare | |
| 6AZ3_Q_4 | 7O7Y_BR_B5 | 0.96 | 0.89 | 0.58 | 0.57 | Ribosomal protein L19 (L19e) C-terminal domain | Eukaryotic large subunit ribosomal RNA | compare |