Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
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Show chains
Interface
show interface as licoriceCommon contacts -
1VQ8_D
|
1VQ8_9
|
4Y4O_1G
|
4Y4O_1B
|
Conserved?
|
---|---|---|---|---|
D:76 [ARG] | 9:3042 [C] | 1G:95 [ARG] | 1B:43 [C] | ✔ |
D:76 [ARG] | 9:3044 [A] | 1G:95 [ARG] | 1B:45 [A] | ✔ |
D:14 [ARG] | 9:3056 [A] | 1G:30 [GLU] | 1B:57 [A] | ✔ |
D:51 [ARG] | 9:3040 [C] | 1G:70 [VAL] | 1B:41 [U] | ✔ |
D:73 [VAL] | 9:3041 [C] | 1G:92 [VAL] | 1B:42 [C] | ✔ |
D:50 [VAL] | 9:3040 [C] | 1G:69 [ALA] | 1B:41 [U] | ✔ |
D:50 [VAL] | 9:3041 [C] | 1G:69 [ALA] | 1B:42 [C] | ✔ |
D:12 [GLU] | 9:3053 [G] | 1G:28 [VAL] | 1B:54 [G] | ✔ |
D:12 [GLU] | 9:3054 [A] | 1G:28 [VAL] | 1B:55 [U] | ✔ |
D:47 [GLN] | 9:3041 [C] | 1G:66 [GLN] | 1B:42 [C] | ✔ |
D:47 [GLN] | 9:3042 [C] | 1G:66 [GLN] | 1B:43 [C] | ✔ |
D:72 [LYS] | 9:3041 [C] | 1G:91 [ARG] | 1B:42 [C] | ✔ |
D:53 [LYS] | 9:3040 [C] | 1G:72 [ARG] | 1B:41 [U] | ✔ |
D:77 [ASP] | 9:3044 [A] | 1G:96 [ARG] | 1B:45 [A] | ✔ |
D:49 [PRO] | 9:3041 [C] | 1G:68 [PRO] | 1B:42 [C] | ✔ |
D:48 [MET] | 9:3041 [C] | 1G:67 [LYS] | 1B:42 [C] | ✔ |
D:52 [THR] | 9:3040 [C] | 1G:71 [THR] | 1B:41 [U] | ✔ |
D:74 [THR] | 9:3041 [C] | 1G:93 [THR] | 1B:42 [C] | ✔ |
D:74 [THR] | 9:3042 [C] | 1G:93 [THR] | 1B:43 [C] | ✔ |
D:13 [MET] | 9:3030 [C] | 1G:29 [TRP] | 1B:31 [C] | ✔ |
D:13 [MET] | 9:3053 [G] | 1G:29 [TRP] | 1B:54 [G] | ✔ |
D:13 [MET] | 9:3054 [A] | 1G:29 [TRP] | 1B:55 [U] | ✔ |
D:13 [MET] | 9:3056 [A] | 1G:29 [TRP] | 1B:57 [A] | ✔ |
D:13 [MET] | 9:3031 [C] | 1G:29 [TRP] | 1B:32 [C] | ❌ 1VQ8_D_9 |
D:77 [ASP] | 9:3031 [C] | 1G:96 [ARG] | 1B:32 [C] | ❌ 1VQ8_D_9 |
D:13 [MET] | 9:3029 [C] | 1G:29 [TRP] | 1B:30 [C] | ❌ 4Y4O_1B:30 no longer at interface |
D:77 [ASP] | 9:3043 [G] | 1G:96 [ARG] | 1B:44 [G] | ❌ 1VQ8_9:3043 no longer at interface |
D:77 [ASP] | 9:3032 [G] | 1G:96 [ARG] | 1B:33 [G] | ❌ 1VQ8_9:3032 no longer at interface |
D:79 [MET] | 9:3043 [G] | 1G:98 [ARG] | 1B:44 [G] | ❌ 1VQ8_D:79, 1VQ8_9:3043 no longer at interface |
D:19 [GLU] | 9:3044 [A] | 1G:35 [GLU] | 1B:45 [A] | ❌ 4Y4O_1G:35 no longer at interface |
D:75 [LEU] | 9:3042 [C] | 1G:94 [LEU] | 1B:43 [C] | ❌ 4Y4O_1G:94 no longer at interface |
D:17 [ARG] | 9:3030 [C] | 1G:33 [ARG] | 1B:31 [C] | ❌ 4Y4O_1G:33 no longer at interface |
D:17 [ARG] | 9:3031 [C] | 1G:33 [ARG] | 1B:32 [C] | ❌ 4Y4O_1G:33 no longer at interface |
D:10 [PHE] | 9:3054 [A] | 1G:26 [GLN] | 1B:55 [U] | ❌ 4Y4O_1G:26 no longer at interface |
D:10 [PHE] | 9:3055 [U] | 1G:26 [GLN] | 1B:56 [G] | ❌ 4Y4O_1G:26 no longer at interface |
D:10 [PHE] | 9:3056 [A] | 1G:26 [GLN] | 1B:57 [A] | ❌ 4Y4O_1G:26 no longer at interface |
D:11 [HIS] | 9:3055 [U] | 1G:27 [ASN] | 1B:56 [G] | ❌ 1VQ8_D:11 no longer at interface |
D:11 [HIS] | 9:3056 [A] | 1G:27 [ASN] | 1B:57 [A] | ❌ 1VQ8_D:11 no longer at interface |
D:11 [HIS] | 9:3054 [A] | 1G:27 [ASN] | 1B:55 [U] | ❌ 1VQ8_D:11 no longer at interface |
D:79 [MET] | 9:3042 [C] | 1G:98 [ARG] | 1B:43 [C] | ❌ 1VQ8_D:79 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Ribosomal protein L5 | 5S ribosomal RNA | 0.81 | 1.52 | 0.33 | 0.78 | 0.8 | 0.83 | 0.77 | 0.78 | 0.85 | 0.33 | 0.88 |
Other pairs involving 1VQ8_D_9 or 4Y4O_1G_1B
Total number of entries: 12