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All interfaces > All interologs > Interface groups > group116 > 1VQ8_D_9 vs 6AZ3_D_8

Interface analysis


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Common contacts -

1VQ8_D
1VQ8_9
6AZ3_D
6AZ3_8
Conserved?
D:76 [ARG] 9:3042 [C] D:74 [ARG] 8:42 [C] ✔
D:76 [ARG] 9:3044 [A] D:74 [ARG] 8:44 [A] ✔
D:151 [ILE] 9:3057 [A] D:150 [VAL] 8:57 [A] ✔
D:14 [ARG] 9:3056 [A] D:12 [ARG] 8:56 [A] ✔
D:73 [VAL] 9:3041 [C] D:71 [CYS] 8:41 [C] ✔
D:153 [THR] 9:3017 [G] D:152 [HIS] 8:19 [G] ✔
D:137 [PRO] 9:3029 [C] D:136 [ARG] 8:30 [C] ✔
D:137 [PRO] 9:3030 [C] D:136 [ARG] 8:31 [C] ✔
D:137 [PRO] 9:3056 [A] D:136 [ARG] 8:56 [A] ✔
D:50 [VAL] 9:3041 [C] D:48 [VAL] 8:41 [C] ✔
D:12 [GLU] 9:3054 [A] D:10 [PRO] 8:54 [U] ✔
D:145 [ASP] 9:3045 [A] D:144 [LYS] 8:45 [U] ✔
D:145 [ASP] 9:3046 [C] D:144 [LYS] 8:46 [U] ✔
D:47 [GLN] 9:3041 [C] D:45 [GLN] 8:41 [C] ✔
D:47 [GLN] 9:3042 [C] D:45 [GLN] 8:42 [C] ✔
D:72 [LYS] 9:3041 [C] D:70 [HIS] 8:41 [C] ✔
D:49 [PRO] 9:3041 [C] D:47 [PRO] 8:41 [C] ✔
D:149 [ARG] 9:3058 [G] D:148 [SER] 8:58 [G] ✔
D:149 [ARG] 9:3059 [C] D:148 [SER] 8:59 [C] ✔
D:140 [ARG] 9:3029 [C] D:139 [ARG] 8:30 [C] ✔
D:140 [ARG] 9:3030 [C] D:139 [ARG] 8:31 [C] ✔
D:140 [ARG] 9:3045 [A] D:139 [ARG] 8:45 [U] ✔
D:140 [ARG] 9:3046 [C] D:139 [ARG] 8:46 [U] ✔
D:48 [MET] 9:3041 [C] D:46 [THR] 8:41 [C] ✔
D:147 [ALA] 9:3058 [G] D:146 [LYS] 8:58 [G] ✔
D:138 [GLY] 9:3029 [C] D:137 [GLY] 8:30 [C] ✔
D:138 [GLY] 9:3030 [C] D:137 [GLY] 8:31 [C] ✔
D:138 [GLY] 9:3056 [A] D:137 [GLY] 8:56 [A] ✔
D:138 [GLY] 9:3057 [A] D:137 [GLY] 8:57 [A] ✔
D:146 [LYS] 9:3046 [C] D:145 [ARG] 8:46 [U] ✔
D:144 [ARG] 9:3028 [U] D:143 [ARG] 8:29 [A] ✔
D:144 [ARG] 9:3029 [C] D:143 [ARG] 8:30 [C] ✔
D:144 [ARG] 9:3045 [A] D:143 [ARG] 8:45 [U] ✔
D:144 [ARG] 9:3046 [C] D:143 [ARG] 8:46 [U] ✔
D:144 [ARG] 9:3058 [G] D:143 [ARG] 8:58 [G] ✔
D:74 [THR] 9:3041 [C] D:72 [THR] 8:41 [C] ✔
D:74 [THR] 9:3042 [C] D:72 [THR] 8:42 [C] ✔
D:155 [HIS] 9:3056 [A] D:154 [HIS] 8:56 [A] ✔
D:155 [HIS] 9:3057 [A] D:154 [HIS] 8:57 [A] ✔
D:141 [VAL] 9:3029 [C] D:140 [VAL] 8:30 [C] ✔
D:141 [VAL] 9:3057 [A] D:140 [VAL] 8:57 [A] ✔
D:141 [VAL] 9:3058 [G] D:140 [VAL] 8:58 [G] ✔
D:139 [TYR] 9:3029 [C] D:138 [GLU] 8:30 [C] ✔
D:139 [TYR] 9:3030 [C] D:138 [GLU] 8:31 [C] ✔
D:143 [LYS] 9:3044 [A] D:142 [HIS] 8:44 [A] ✔
D:143 [LYS] 9:3045 [A] D:142 [HIS] 8:45 [U] ✔
D:143 [LYS] 9:3046 [C] D:142 [HIS] 8:46 [U] ✔
D:13 [MET] 9:3029 [C] D:11 [MET] 8:30 [C] ✔
D:13 [MET] 9:3030 [C] D:11 [MET] 8:31 [C] ✔
D:13 [MET] 9:3053 [G] D:11 [MET] 8:53 [G] ✔
D:13 [MET] 9:3054 [A] D:11 [MET] 8:54 [U] ✔
D:13 [MET] 9:3056 [A] D:11 [MET] 8:56 [A] ✔
D:152 [PRO] 9:3057 [A] D:151 [GLY] 8:57 [A] ✔
D:152 [PRO] 9:3058 [G] D:151 [GLY] 8:58 [G] ✔
D:19 [GLU] 9:3044 [A] D:17 [LYS] 8:44 [A] ❌ 6AZ3_D_8
D:154 [LYS] 9:3016 [G] D:153 [SER] 8:18 [U] ❌ 6AZ3_D_8
D:154 [LYS] 9:3017 [G] D:153 [SER] 8:19 [G] ❌ 6AZ3_D_8
D:154 [LYS] 9:3018 [U] D:153 [SER] 8:20 [A] ❌ 6AZ3_D_8
D:12 [GLU] 9:3053 [G] D:10 [PRO] 8:53 [G] ❌ 6AZ3_D_8
D:140 [ARG] 9:3044 [A] D:139 [ARG] 8:44 [A] ❌ 6AZ3_D_8
D:137 [PRO] 9:3031 [C] D:136 [ARG] 8:32 [A] ❌ 1VQ8_D_9
D:146 [LYS] 9:3028 [U] D:145 [ARG] 8:29 [A] ❌ 1VQ8_D_9
D:147 [ALA] 9:3028 [U] D:146 [LYS] 8:29 [A] ❌ 1VQ8_D_9
D:153 [THR] 9:3018 [U] D:152 [HIS] 8:20 [A] ❌ 1VQ8_D_9
D:154 [LYS] 9:3056 [A] D:153 [SER] 8:56 [A] ❌ 1VQ8_D_9
D:154 [LYS] 9:3057 [A] D:153 [SER] 8:57 [A] ❌ 1VQ8_D_9
D:19 [GLU] 9:3030 [C] D:17 [LYS] 8:31 [C] ❌ 1VQ8_D_9
D:146 [LYS] 9:3047 [A] D:145 [ARG] 8:47 [U] ❌ 6AZ3_8:47 no longer at interface
D:147 [ALA] 9:3005 [G] D:146 [LYS] 8:7 [A] ❌ 1VQ8_9:3005 no longer at interface
D:147 [ALA] 9:3027 [C] D:146 [LYS] 8:28 [C] ❌ 1VQ8_9:3027 no longer at interface
D:150 [SER] 9:3015 [C] D:149 [ARG] 8:17 [U] ❌ 1VQ8_D:150, 1VQ8_9:3015 no longer at interface
D:75 [LEU] 9:3042 [C] D:73 [VAL] 8:42 [C] ❌ 6AZ3_D:73 no longer at interface
D:77 [ASP] 9:3044 [A] D:75 [GLY] 8:44 [A] ❌ 6AZ3_D:75 no longer at interface
D:17 [ARG] 9:3030 [C] D:15 [VAL] 8:31 [C] ❌ 6AZ3_D:15 no longer at interface
D:17 [ARG] 9:3031 [C] D:15 [VAL] 8:32 [A] ❌ 6AZ3_D:15 no longer at interface
D:10 [PHE] 9:3054 [A] D:8 [ALA] 8:54 [U] ❌ 6AZ3_D:8 no longer at interface
D:10 [PHE] 9:3055 [U] D:8 [ALA] 8:55 [U] ❌ 6AZ3_D:8 no longer at interface
D:10 [PHE] 9:3056 [A] D:8 [ALA] 8:56 [A] ❌ 6AZ3_D:8 no longer at interface
D:150 [SER] 9:3058 [G] D:149 [ARG] 8:58 [G] ❌ 1VQ8_D:150 no longer at interface
D:150 [SER] 9:3057 [A] D:149 [ARG] 8:57 [A] ❌ 1VQ8_D:150 no longer at interface
D:150 [SER] 9:3016 [G] D:149 [ARG] 8:18 [U] ❌ 1VQ8_D:150 no longer at interface
D:11 [HIS] 9:3054 [A] D:9 [ASN] 8:54 [U] ❌ 1VQ8_D:11 no longer at interface
D:11 [HIS] 9:3056 [A] D:9 [ASN] 8:56 [A] ❌ 1VQ8_D:11 no longer at interface
D:11 [HIS] 9:3055 [U] D:9 [ASN] 8:55 [U] ❌ 1VQ8_D:11 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L5 5S ribosomal RNA 0.91 1.24 0.40 0.91 0.82 0.93 0.9 0.78 0.83 0.42 0.57


Other pairs involving 1VQ8_D_9 or 6AZ3_D_8

Total number of entries: 12

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_D_8 7O7Y_BJ_B7 0.86 0.98 0.79 0.57 Ribosomal protein L5 5S ribosomal RNA compare
6AZ3_D_8 7RYG_F_B 0.97 0.78 0.92 0.41 Ribosomal protein L5 5S ribosomal RNA compare
6AZ3_D_8 7ASM_F_B 0.71 0.81 1.32 0.36 Ribosomal protein L5 5S ribosomal RNA compare
6AZ3_D_8 6S0Z_F_B 0.96 0.79 1.18 0.29 Ribosomal protein L5 5S ribosomal RNA compare
1VQ8_D_9 7O7Y_BJ_B7 0.75 0.92 0.93 0.39 Ribosomal protein L5 5S ribosomal RNA compare
1VQ8_D_9 4Y4O_1G_1B 0.78 0.81 1.52 0.33 Ribosomal protein L5 5S ribosomal RNA compare
1VQ8_D_9 6AZ3_D_8 0.78 0.91 1.24 0.4 Ribosomal protein L5 5S ribosomal RNA compare
1VQ8_D_9 7ASM_F_B 0.52 0.78 1.79 0.45 Ribosomal protein L5 5S ribosomal RNA compare
1VQ8_D_9 6S0Z_F_B 0.87 0.79 1.51 0.47 Ribosomal protein L5 5S ribosomal RNA compare
1VQ8_D_9 7RYG_F_B 0.81 0.76 1.39 0.59 Ribosomal protein L5 5S ribosomal RNA compare
1YHQ_D_9 6AZ3_D_8 0.79 0.91 1.17 0.4 Ribosomal protein L5 5S ribosomal RNA compare
4Y4O_1G_1B 6AZ3_D_8 0.89 0.8 1.42 0.28 Ribosomal protein L5 5S ribosomal RNA compare