RNAprotDB

All interfaces > All interologs > Interface groups > group116 > 1VQ8_D_9 vs 7ASM_F_B

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

1VQ8_D
1VQ8_9
7ASM_F
7ASM_B
Conserved?
D:76 [ARG] 9:3042 [C] F:92 [ARG] B:41 [C] ✔
D:14 [ARG] 9:3056 [A] F:27 [GLU] B:55 [A] ✔
D:73 [VAL] 9:3041 [C] F:89 [VAL] B:40 [C] ✔
D:50 [VAL] 9:3040 [C] F:66 [LEU] B:39 [G] ✔
D:50 [VAL] 9:3041 [C] F:66 [LEU] B:40 [C] ✔
D:47 [GLN] 9:3041 [C] F:63 [GLN] B:40 [C] ✔
D:48 [MET] 9:3041 [C] F:64 [LYS] B:40 [C] ✔
D:74 [THR] 9:3041 [C] F:90 [THR] B:40 [C] ✔
D:74 [THR] 9:3042 [C] F:90 [THR] B:41 [C] ✔
D:13 [MET] 9:3054 [A] F:26 [MET] B:53 [U] ✔
D:13 [MET] 9:3056 [A] F:26 [MET] B:55 [A] ✔
D:10 [PHE] 9:3056 [A] F:23 [SER] B:55 [A] ✔
D:47 [GLN] 9:3042 [C] F:63 [GLN] B:41 [C] ❌ 7ASM_F_B
D:10 [PHE] 9:3054 [A] F:23 [SER] B:53 [U] ❌ 7ASM_F_B
D:10 [PHE] 9:3055 [U] F:23 [SER] B:54 [U] ❌ 7ASM_F_B
D:77 [ASP] 9:3042 [C] F:93 [GLY] B:41 [C] ❌ 1VQ8_D_9
D:76 [ARG] 9:3044 [A] F:92 [ARG] B:43 [A] ❌ 7ASM_B:43 no longer at interface
D:19 [GLU] 9:3044 [A] F:32 [ASP] B:43 [A] ❌ 7ASM_F:32, 7ASM_B:43 no longer at interface
D:12 [GLU] 9:3053 [G] F:25 [VAL] B:52 [G] ❌ 7ASM_F:25, 7ASM_B:52 no longer at interface
D:77 [ASP] 9:3044 [A] F:93 [GLY] B:43 [A] ❌ 7ASM_B:43 no longer at interface
D:17 [ARG] 9:3030 [C] F:30 [LYS] B:29 [C] ❌ 7ASM_F:30, 7ASM_B:29 no longer at interface
D:17 [ARG] 9:3031 [C] F:30 [LYS] B:30 [U] ❌ 7ASM_F:30, 7ASM_B:30 no longer at interface
D:13 [MET] 9:3029 [C] F:26 [MET] B:28 [C] ❌ 7ASM_B:28 no longer at interface
D:13 [MET] 9:3030 [C] F:26 [MET] B:29 [C] ❌ 7ASM_B:29 no longer at interface
D:13 [MET] 9:3053 [G] F:26 [MET] B:52 [G] ❌ 7ASM_B:52 no longer at interface
D:75 [LEU] 9:3042 [C] F:91 [LEU] B:41 [C] ❌ 7ASM_F:91 no longer at interface
D:51 [ARG] 9:3040 [C] F:67 [VAL] B:39 [G] ❌ 7ASM_F:67 no longer at interface
D:12 [GLU] 9:3054 [A] F:25 [VAL] B:53 [U] ❌ 7ASM_F:25 no longer at interface
D:72 [LYS] 9:3041 [C] F:88 [LYS] B:40 [C] ❌ 7ASM_F:88 no longer at interface
D:53 [LYS] 9:3040 [C] F:69 [LYS] B:39 [G] ❌ 7ASM_F:69 no longer at interface
D:49 [PRO] 9:3041 [C] F:65 [PRO] B:40 [C] ❌ 7ASM_F:65 no longer at interface
D:52 [THR] 9:3040 [C] F:68 [THR] B:39 [G] ❌ 7ASM_F:68 no longer at interface
D:11 [HIS] 9:3056 [A] F:24 [SER] B:55 [A] ❌ 1VQ8_D:11 no longer at interface
D:11 [HIS] 9:3054 [A] F:24 [SER] B:53 [U] ❌ 1VQ8_D:11 no longer at interface
D:11 [HIS] 9:3055 [U] F:24 [SER] B:54 [U] ❌ 1VQ8_D:11 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L5 5S ribosomal RNA 0.78 1.79 0.45 0.73 0.8 0.91 1.0 0.52 0.59 0.33 0.83


Other pairs involving 1VQ8_D_9 or 7ASM_F_B

Total number of entries: 12

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_D_9 4Y4O_1G_1B 0.78 0.81 1.52 0.33 Ribosomal protein L5 5S ribosomal RNA compare
1VQ8_D_9 6AZ3_D_8 0.78 0.91 1.24 0.4 Ribosomal protein L5 5S ribosomal RNA compare
1VQ8_D_9 6S0Z_F_B 0.87 0.79 1.51 0.47 Ribosomal protein L5 5S ribosomal RNA compare
6AZ3_D_8 7ASM_F_B 0.71 0.81 1.32 0.36 Ribosomal protein L5 5S ribosomal RNA compare
1VQ8_D_9 7ASM_F_B 0.52 0.78 1.79 0.45 Ribosomal protein L5 5S ribosomal RNA compare
1YHQ_D_9 7ASM_F_B 0.51 0.79 1.67 0.45 Ribosomal protein L5 5S ribosomal RNA compare
4Y4O_1G_1B 7ASM_F_B 0.51 0.91 1.54 0.55 Ribosomal protein L5 5S ribosomal RNA compare
6S0Z_F_B 7ASM_F_B 0.65 0.96 1.26 0.91 Ribosomal protein L5 5S ribosomal RNA compare
1VQ8_D_9 7O7Y_BJ_B7 0.75 0.92 0.93 0.39 Ribosomal protein L5 5S ribosomal RNA compare
7ASM_F_B 7O7Y_BJ_B7 0.64 0.81 1.22 0.36 Ribosomal protein L5 5S ribosomal RNA compare
1VQ8_D_9 7RYG_F_B 0.81 0.76 1.39 0.59 Ribosomal protein L5 5S ribosomal RNA compare
7ASM_F_B 7RYG_F_B 0.65 0.89 1.25 0.64 Ribosomal protein L5 5S ribosomal RNA compare