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All interfaces > All interologs > Interface groups > group116 > 1VQ8_D_9 vs 7RYG_F_B

Interface analysis


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Common contacts -

1VQ8_D
1VQ8_9
7RYG_F
7RYG_B
Conserved?
D:76 [ARG] 9:3042 [C] F:92 [ARG] B:41 [C] ✔
D:76 [ARG] 9:3044 [A] F:92 [ARG] B:43 [A] ✔
D:75 [LEU] 9:3042 [C] F:91 [LEU] B:41 [C] ✔
D:14 [ARG] 9:3056 [A] F:27 [GLU] B:55 [A] ✔
D:51 [ARG] 9:3040 [C] F:67 [VAL] B:39 [C] ✔
D:73 [VAL] 9:3041 [C] F:89 [VAL] B:40 [C] ✔
D:50 [VAL] 9:3040 [C] F:66 [VAL] B:39 [C] ✔
D:50 [VAL] 9:3041 [C] F:66 [VAL] B:40 [C] ✔
D:12 [GLU] 9:3053 [G] F:25 [VAL] B:52 [G] ✔
D:12 [GLU] 9:3054 [A] F:25 [VAL] B:53 [U] ✔
D:47 [GLN] 9:3041 [C] F:63 [GLN] B:40 [C] ✔
D:47 [GLN] 9:3042 [C] F:63 [GLN] B:41 [C] ✔
D:72 [LYS] 9:3041 [C] F:88 [LYS] B:40 [C] ✔
D:53 [LYS] 9:3040 [C] F:69 [LEU] B:39 [C] ✔
D:49 [PRO] 9:3041 [C] F:65 [PRO] B:40 [C] ✔
D:48 [MET] 9:3041 [C] F:64 [LYS] B:40 [C] ✔
D:17 [ARG] 9:3031 [C] F:30 [ARG] B:30 [U] ✔
D:74 [THR] 9:3041 [C] F:90 [THR] B:40 [C] ✔
D:74 [THR] 9:3042 [C] F:90 [THR] B:41 [C] ✔
D:13 [MET] 9:3029 [C] F:26 [MET] B:28 [C] ✔
D:13 [MET] 9:3053 [G] F:26 [MET] B:52 [G] ✔
D:13 [MET] 9:3054 [A] F:26 [MET] B:53 [U] ✔
D:13 [MET] 9:3056 [A] F:26 [MET] B:55 [A] ✔
D:17 [ARG] 9:3030 [C] F:30 [ARG] B:29 [C] ❌ 7RYG_B:29 no longer at interface
D:13 [MET] 9:3030 [C] F:26 [MET] B:29 [C] ❌ 7RYG_B:29 no longer at interface
D:19 [GLU] 9:3044 [A] F:32 [THR] B:43 [A] ❌ 7RYG_F:32 no longer at interface
D:77 [ASP] 9:3044 [A] F:93 [GLY] B:43 [A] ❌ 7RYG_F:93 no longer at interface
D:52 [THR] 9:3040 [C] F:68 [THR] B:39 [C] ❌ 7RYG_F:68 no longer at interface
D:10 [PHE] 9:3054 [A] F:23 [LYS] B:53 [U] ❌ 7RYG_F:23 no longer at interface
D:10 [PHE] 9:3055 [U] F:23 [LYS] B:54 [G] ❌ 7RYG_F:23 no longer at interface
D:10 [PHE] 9:3056 [A] F:23 [LYS] B:55 [A] ❌ 7RYG_F:23 no longer at interface
D:157 [LEU] 9:3056 [A] F:161 [ARG] B:55 [A] ❌ 1VQ8_D:157 no longer at interface
D:11 [HIS] 9:3056 [A] F:24 [ASN] B:55 [A] ❌ 1VQ8_D:11 no longer at interface
D:11 [HIS] 9:3055 [U] F:24 [ASN] B:54 [G] ❌ 1VQ8_D:11 no longer at interface
D:11 [HIS] 9:3054 [A] F:24 [ASN] B:53 [U] ❌ 1VQ8_D:11 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L5 5S ribosomal RNA 0.76 1.39 0.59 0.75 0.76 0.88 1.0 0.81 0.76 0.38 1.00


Other pairs involving 1VQ8_D_9 or 7RYG_F_B

Total number of entries: 12

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_D_8 7RYG_F_B 0.97 0.78 0.92 0.41 Ribosomal protein L5 5S ribosomal RNA compare
1VQ8_D_9 7O7Y_BJ_B7 0.75 0.92 0.93 0.39 Ribosomal protein L5 5S ribosomal RNA compare
1VQ8_D_9 4Y4O_1G_1B 0.78 0.81 1.52 0.33 Ribosomal protein L5 5S ribosomal RNA compare
1VQ8_D_9 6AZ3_D_8 0.78 0.91 1.24 0.4 Ribosomal protein L5 5S ribosomal RNA compare
1VQ8_D_9 7ASM_F_B 0.52 0.78 1.79 0.45 Ribosomal protein L5 5S ribosomal RNA compare
1VQ8_D_9 6S0Z_F_B 0.87 0.79 1.51 0.47 Ribosomal protein L5 5S ribosomal RNA compare
1VQ8_D_9 7RYG_F_B 0.81 0.76 1.39 0.59 Ribosomal protein L5 5S ribosomal RNA compare
7ASM_F_B 7RYG_F_B 0.65 0.89 1.25 0.64 Ribosomal protein L5 5S ribosomal RNA compare
1YHQ_D_9 7RYG_F_B 0.83 0.76 1.32 0.59 Ribosomal protein L5 5S ribosomal RNA compare
7O7Y_BJ_B7 7RYG_F_B 0.97 0.76 1.11 0.47 Ribosomal protein L5 5S ribosomal RNA compare
4Y4O_1G_1B 7RYG_F_B 0.85 0.91 0.99 0.59 Ribosomal protein L5 5S ribosomal RNA compare
6S0Z_F_B 7RYG_F_B 0.93 0.9 0.9 0.6 Ribosomal protein L5 5S ribosomal RNA compare