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All interfaces > All interologs > Interface groups > group116 > 1YHQ_D_9

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Licorice
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Licorice
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Chain
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1YHQ_D
1YHQ_9
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
D:10 [PHE] 9:54 [A] 4.44 9:28 [U] 29.21
D:10 [PHE] 9:55 [U] 4.7 9:27 [C] 29.21
D:10 [PHE] 9:56 [A] 3.57 29.21
D:12 [GLU] 9:53 [G] 2.59 9:29 [C] sugar:SC 13.34
D:12 [GLU] 9:54 [A] 3.48 9:28 [U] 13.34
D:13 [MET] 9:29 [C] 3.2 9:53 [G] 81.06
D:13 [MET] 9:30 [C] 4.15 9:50 [G] 81.06
D:13 [MET] 9:53 [G] 3.06 9:29 [C] 81.06
D:13 [MET] 9:54 [A] 3.54 9:28 [U] 81.06
D:13 [MET] 9:56 [A] 3.16 81.06
D:14 [ARG] 9:56 [A] 3.06 53.71
D:17 [ARG] 9:30 [C] 3.25 9:50 [G] 43.48
D:17 [ARG] 9:31 [C] 4.76 9:49 [G] 43.48
D:19 [GLU] 9:44 [A] 4.31 9:39 [U] 60.01
D:47 [GLN] 9:41 [C] 3.48 67.01
D:47 [GLN] 9:42 [C] 3.59 67.01
D:48 [MET] 9:41 [C] 3.43 63.65
D:49 [PRO] 9:41 [C] 3.65 78.88
D:50 [VAL] 9:40 [C] 3.94 68.73
D:50 [VAL] 9:41 [C] 2.91 68.73
D:51 [ARG] 9:40 [C] 3.56 6.85
D:52 [THR] 9:40 [C] 4.57 84.96
D:53 [LYS] 9:40 [C] 3.43 0.03
D:72 [LYS] 9:41 [C] 3.75 62.65
D:73 [VAL] 9:41 [C] 3.66 85.97
D:74 [THR] 9:41 [C] 2.85 base:BB, base:SC, base:SC 99.0
D:74 [THR] 9:42 [C] 3.09 99.0
D:75 [LEU] 9:42 [C] 4.75 84.5
D:76 [ARG] 9:42 [C] 2.53 base:SC 98.97
D:76 [ARG] 9:44 [A] 2.35 9:39 [U] sugar:SC base/AA stacks 98.97
D:77 [ASP] 9:44 [A] 3.6 9:39 [U] 57.82
D:137 [PRO] 9:29 [C] 2.95 9:53 [G] 64.27
D:137 [PRO] 9:30 [C] 2.31 9:50 [G] 64.27
D:137 [PRO] 9:56 [A] 4.55 64.27
D:138 [GLY] 9:29 [C] 3.36 9:53 [G] 98.58
D:138 [GLY] 9:30 [C] 4.4 9:50 [G] 98.58
D:138 [GLY] 9:56 [A] 4.18 98.58
D:138 [GLY] 9:57 [A] 3.99 98.58
D:139 [TYR] 9:29 [C] 4.65 9:53 [G] 27.15
D:139 [TYR] 9:30 [C] 4.61 9:50 [G] 27.15
D:140 [ARG] 9:29 [C] 2.82 9:53 [G] 98.06
D:140 [ARG] 9:30 [C] 3.51 9:50 [G] 98.06
D:140 [ARG] 9:44 [A] 4.88 9:39 [U] 98.06
D:140 [ARG] 9:45 [A] 2.59 9:38 [A] 98.06
D:140 [ARG] 9:46 [C] 2.83 98.06
D:141 [VAL] 9:29 [C] 3.95 9:53 [G] 80.72
D:141 [VAL] 9:57 [A] 3.34 80.72
D:141 [VAL] 9:58 [G] 3.79 80.72
D:143 [LYS] 9:44 [A] 4.12 9:39 [U] 42.7
D:143 [LYS] 9:45 [A] 3.25 9:38 [A] 42.7
D:143 [LYS] 9:46 [C] 4.98 42.7
D:144 [ARG] 9:28 [U] 3.13 9:54 [A] 98.01
D:144 [ARG] 9:29 [C] 3.04 9:53 [G] 98.01
D:144 [ARG] 9:45 [A] 3.61 9:38 [A] 98.01
D:144 [ARG] 9:46 [C] 3.49 98.01
D:144 [ARG] 9:58 [G] 3.41 sugar:SC 98.01
D:145 [ASP] 9:45 [A] 3.91 9:38 [A] 57.42
D:145 [ASP] 9:46 [C] 2.78 57.42
D:146 [LYS] 9:46 [C] 4.52 35.38
D:146 [LYS] 9:47 [A] 4.61 9:33 [U] 35.38
D:147 [ALA] 9:58 [G] 4.35 25.25
D:149 [ARG] 9:58 [G] 3.5 42.16
D:149 [ARG] 9:59 [C] 3.66 9:21 [G] 42.16
D:151 [ILE] 9:57 [A] 4.15 69.29
D:152 [PRO] 9:57 [A] 3.03 61.62
D:152 [PRO] 9:58 [G] 3.4 61.62
D:153 [THR] 9:17 [G] 3.28 9:63 [C] 7.48
D:154 [LYS] 9:16 [G] 4.74 9:64 [C] 29.79
D:154 [LYS] 9:17 [G] 2.84 9:63 [C] 29.79
D:154 [LYS] 9:18 [U] 3.5 9:62 [A] 29.79
D:155 [HIS] 9:56 [A] 2.87 sugar:SC 79.95
D:155 [HIS] 9:57 [A] 3.55 79.95

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group116 1YHQ_D_9 D: 50s ribosomal protein l5p, Haloarcula marismortui (natural) 9: 5s ribosomal RNA, Haloarcula marismortui (natural) P14124 Ribosomal protein L5 5S ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_D_9 7O7Y_BJ_B7 0.76 0.92 0.87 0.39 Ribosomal protein L5 5S ribosomal RNA compare
1YHQ_D_9 6AZ3_D_8 0.79 0.91 1.17 0.4 Ribosomal protein L5 5S ribosomal RNA compare
1YHQ_D_9 7RYG_F_B 0.83 0.76 1.32 0.59 Ribosomal protein L5 5S ribosomal RNA compare
1YHQ_D_9 6S0Z_F_B 0.87 0.79 1.43 0.47 Ribosomal protein L5 5S ribosomal RNA compare
1YHQ_D_9 4Y4O_1G_1B 0.79 0.81 1.45 0.33 Ribosomal protein L5 5S ribosomal RNA compare
1YHQ_D_9 7ASM_F_B 0.51 0.79 1.67 0.45 Ribosomal protein L5 5S ribosomal RNA compare