RNAprotDB

Interface analysis

Contacts -

4Y4O_1G	4Y4O_1B	Distance	Base Pair	Hbond nuc:res	Base Stacking	Residue conservation
1G:2 [PRO]	1B:33 [G]	3.93	1B:49 [C]			31.58
1G:2 [PRO]	1B:34 [U]	3.24	1B:48 [A]			31.58
1G:27 [ASN]	1B:55 [U]	2.95	1B:29 [A]	sugar:SC		91.36
1G:27 [ASN]	1B:56 [G]	3.62	1B:28 [C]			91.36
1G:27 [ASN]	1B:57 [A]	3.54				91.36
1G:28 [VAL]	1B:54 [G]	4.61	1B:30 [C]			19.44
1G:28 [VAL]	1B:55 [U]	3.9	1B:29 [A]			19.44
1G:29 [TRP]	1B:31 [C]	3.48	1B:51 [G]			56.5
1G:29 [TRP]	1B:32 [C]	4.59	1B:50 [G]			56.5
1G:29 [TRP]	1B:54 [G]	3.57	1B:30 [C]			56.5
1G:29 [TRP]	1B:55 [U]	3.22	1B:29 [A]	sugar:SC		56.5
1G:29 [TRP]	1B:57 [A]	3.27				56.5
1G:30 [GLU]	1B:57 [A]	3.34				54.8
1G:66 [GLN]	1B:42 [C]	3.17		sugar:SC		90.43
1G:66 [GLN]	1B:43 [C]	3.23				90.43
1G:67 [LYS]	1B:42 [C]	2.67		sugar:BB		68.68
1G:68 [PRO]	1B:42 [C]	4.04				81.51
1G:69 [ALA]	1B:41 [U]	3.92				35.44
1G:69 [ALA]	1B:42 [C]	3.51				35.44
1G:70 [VAL]	1B:41 [U]	2.72				27.38
1G:71 [THR]	1B:41 [U]	4.09				78.61
1G:72 [ARG]	1B:41 [U]	3.2				49.63
1G:91 [ARG]	1B:42 [C]	3.65			base/AA stacks	61.39
1G:92 [VAL]	1B:42 [C]	3.11				91.56
1G:93 [THR]	1B:42 [C]	2.5		base:BB, base:SC		99.0
1G:93 [THR]	1B:43 [C]	3.39		sugar:BB		99.0
1G:95 [ARG]	1B:43 [C]	2.84		base:SC, base:SC		93.08
1G:95 [ARG]	1B:45 [A]	3.06	1B:40 [U]		base/AA stacks	93.08
1G:96 [ARG]	1B:32 [C]	4.82	1B:50 [G]			66.94
1G:96 [ARG]	1B:33 [G]	4.87	1B:49 [C]			66.94
1G:96 [ARG]	1B:44 [G]	3.94	1B:38 [C]			66.94
1G:96 [ARG]	1B:45 [A]	2.66	1B:40 [U]			66.94
1G:98 [ARG]	1B:43 [C]	3.06				50.78
1G:98 [ARG]	1B:44 [G]	3.15	1B:38 [C]			50.78

Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID	Structure ID	Structure description	UniProt ID	ECOD label(s)	RFAM label(s)	Is ribosome?	RCSB PDB link
group116	4Y4O_1G_1B	1G: 50s ribosomal protein l5, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1B: 5s ribosomal RNA, Thermus thermophilus hb8 (natural)	Q5SHQ0	Ribosomal protein L5	5S ribosomal RNA	✔

Interologs

Interface 1	Interface 2	Percentage conservation	Interface TM-score	Interface RMSD	Percentage identity	Common ECOD label(s)	Common RFAM label(s)	Explore both interfaces
1VQ8_D_9	4Y4O_1G_1B	0.78	0.81	1.52	0.33	Ribosomal protein L5	5S ribosomal RNA	compare
1YHQ_D_9	4Y4O_1G_1B	0.79	0.81	1.45	0.33	Ribosomal protein L5	5S ribosomal RNA	compare
4Y4O_1G_1B	7ASM_F_B	0.51	0.91	1.54	0.55	Ribosomal protein L5	5S ribosomal RNA	compare
4Y4O_1G_1B	6S0Z_F_B	0.87	0.92	0.97	0.53	Ribosomal protein L5	5S ribosomal RNA	compare
4Y4O_1G_1B	7RYG_F_B	0.85	0.91	0.99	0.59	Ribosomal protein L5	5S ribosomal RNA	compare
4Y4O_1G_1B	7O7Y_BJ_B7	0.86	0.79	1.41	0.28	Ribosomal protein L5	5S ribosomal RNA	compare
4Y4O_1G_1B	6AZ3_D_8	0.89	0.8	1.42	0.28	Ribosomal protein L5	5S ribosomal RNA	compare

Interface 1

Interface 2

Percentage conservation

Interface TM-score

Interface RMSD

Percentage identity

Common ECOD label(s)

Common RFAM label(s)

Explore both interfaces

1VQ8_D_9

4Y4O_1G_1B

0.78