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All interfaces > All interologs > Interface groups > group116 > 4Y4O_1G_1B vs 6AZ3_D_8

Interface analysis


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Common contacts -

4Y4O_1G
4Y4O_1B
6AZ3_D
6AZ3_8
Conserved?
1G:29 [TRP] 1B:31 [C] D:11 [MET] 8:31 [C] ✔
1G:29 [TRP] 1B:54 [G] D:11 [MET] 8:53 [G] ✔
1G:29 [TRP] 1B:55 [U] D:11 [MET] 8:54 [U] ✔
1G:29 [TRP] 1B:57 [A] D:11 [MET] 8:56 [A] ✔
1G:69 [ALA] 1B:42 [C] D:48 [VAL] 8:41 [C] ✔
1G:92 [VAL] 1B:42 [C] D:71 [CYS] 8:41 [C] ✔
1G:66 [GLN] 1B:42 [C] D:45 [GLN] 8:41 [C] ✔
1G:66 [GLN] 1B:43 [C] D:45 [GLN] 8:42 [C] ✔
1G:68 [PRO] 1B:42 [C] D:47 [PRO] 8:41 [C] ✔
1G:30 [GLU] 1B:57 [A] D:12 [ARG] 8:56 [A] ✔
1G:95 [ARG] 1B:43 [C] D:74 [ARG] 8:42 [C] ✔
1G:95 [ARG] 1B:45 [A] D:74 [ARG] 8:44 [A] ✔
1G:28 [VAL] 1B:55 [U] D:10 [PRO] 8:54 [U] ✔
1G:27 [ASN] 1B:55 [U] D:9 [ASN] 8:54 [U] ✔
1G:27 [ASN] 1B:56 [G] D:9 [ASN] 8:55 [U] ✔
1G:27 [ASN] 1B:57 [A] D:9 [ASN] 8:56 [A] ✔
1G:91 [ARG] 1B:42 [C] D:70 [HIS] 8:41 [C] ✔
1G:67 [LYS] 1B:42 [C] D:46 [THR] 8:41 [C] ✔
1G:93 [THR] 1B:42 [C] D:72 [THR] 8:41 [C] ✔
1G:93 [THR] 1B:43 [C] D:72 [THR] 8:42 [C] ✔
1G:29 [TRP] 1B:32 [C] D:11 [MET] 8:32 [A] ❌ 6AZ3_D_8
1G:28 [VAL] 1B:54 [G] D:10 [PRO] 8:53 [G] ❌ 6AZ3_D_8
1G:96 [ARG] 1B:33 [G] D:75 [GLY] 8:33 [U] ❌ 6AZ3_D:75, 6AZ3_8:33 no longer at interface
1G:96 [ARG] 1B:44 [G] D:75 [GLY] 8:43 [G] ❌ 6AZ3_D:75, 6AZ3_8:43 no longer at interface
1G:98 [ARG] 1B:44 [G] D:77 [LYS] 8:43 [G] ❌ 6AZ3_D:77, 6AZ3_8:43 no longer at interface
1G:29 [TRP] 1B:30 [C] D:11 [MET] 8:30 [C] ❌ 4Y4O_1B:30 no longer at interface
1G:96 [ARG] 1B:32 [C] D:75 [GLY] 8:32 [A] ❌ 6AZ3_D:75 no longer at interface
1G:96 [ARG] 1B:45 [A] D:75 [GLY] 8:44 [A] ❌ 6AZ3_D:75 no longer at interface
1G:98 [ARG] 1B:43 [C] D:77 [LYS] 8:42 [C] ❌ 6AZ3_D:77 no longer at interface
1G:35 [GLU] 1B:31 [C] D:17 [LYS] 8:31 [C] ❌ 4Y4O_1G:35 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L5 5S ribosomal RNA 0.8 1.42 0.28 0.76 0.75 0.67 0.69 0.89 0.91 0.27 0.80


Other pairs involving 4Y4O_1G_1B or 6AZ3_D_8

Total number of entries: 13

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_D_9 4Y4O_1G_1B 0.78 0.81 1.52 0.33 Ribosomal protein L5 5S ribosomal RNA compare
1YHQ_D_9 4Y4O_1G_1B 0.79 0.81 1.45 0.33 Ribosomal protein L5 5S ribosomal RNA compare
1VQ8_D_9 6AZ3_D_8 0.78 0.91 1.24 0.4 Ribosomal protein L5 5S ribosomal RNA compare
1YHQ_D_9 6AZ3_D_8 0.79 0.91 1.17 0.4 Ribosomal protein L5 5S ribosomal RNA compare
4Y4O_1G_1B 6AZ3_D_8 0.89 0.8 1.42 0.28 Ribosomal protein L5 5S ribosomal RNA compare
6AZ3_D_8 6S0Z_F_B 0.96 0.79 1.18 0.29 Ribosomal protein L5 5S ribosomal RNA compare
4Y4O_1G_1B 6S0Z_F_B 0.87 0.92 0.97 0.53 Ribosomal protein L5 5S ribosomal RNA compare
6AZ3_D_8 7ASM_F_B 0.71 0.81 1.32 0.36 Ribosomal protein L5 5S ribosomal RNA compare
4Y4O_1G_1B 7ASM_F_B 0.51 0.91 1.54 0.55 Ribosomal protein L5 5S ribosomal RNA compare
6AZ3_D_8 7O7Y_BJ_B7 0.86 0.98 0.79 0.57 Ribosomal protein L5 5S ribosomal RNA compare
4Y4O_1G_1B 7O7Y_BJ_B7 0.86 0.79 1.41 0.28 Ribosomal protein L5 5S ribosomal RNA compare
6AZ3_D_8 7RYG_F_B 0.97 0.78 0.92 0.41 Ribosomal protein L5 5S ribosomal RNA compare
4Y4O_1G_1B 7RYG_F_B 0.85 0.91 0.99 0.59 Ribosomal protein L5 5S ribosomal RNA compare