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All interfaces > All interologs > Interface groups > group116 > 4Y4O_1G_1B vs 7O7Y_BJ_B7

Interface analysis


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Common contacts -

4Y4O_1G
4Y4O_1B
7O7Y_BJ
7O7Y_B7
Conserved?
1G:29 [TRP] 1B:31 [C] BJ:12 [MET] B7:29 [C] ✔
1G:29 [TRP] 1B:54 [G] BJ:12 [MET] B7:51 [G] ✔
1G:29 [TRP] 1B:55 [U] BJ:12 [MET] B7:52 [C] ✔
1G:29 [TRP] 1B:57 [A] BJ:12 [MET] B7:54 [A] ✔
1G:69 [ALA] 1B:42 [C] BJ:49 [VAL] B7:39 [C] ✔
1G:92 [VAL] 1B:42 [C] BJ:72 [CYS] B7:39 [C] ✔
1G:66 [GLN] 1B:42 [C] BJ:46 [GLN] B7:39 [C] ✔
1G:66 [GLN] 1B:43 [C] BJ:46 [GLN] B7:40 [U] ✔
1G:68 [PRO] 1B:42 [C] BJ:48 [PRO] B7:39 [C] ✔
1G:30 [GLU] 1B:57 [A] BJ:13 [ARG] B7:54 [A] ✔
1G:95 [ARG] 1B:43 [C] BJ:75 [ARG] B7:40 [U] ✔
1G:95 [ARG] 1B:45 [A] BJ:75 [ARG] B7:42 [A] ✔
1G:28 [VAL] 1B:54 [G] BJ:11 [PRO] B7:51 [G] ✔
1G:28 [VAL] 1B:55 [U] BJ:11 [PRO] B7:52 [C] ✔
1G:27 [ASN] 1B:55 [U] BJ:10 [ASN] B7:52 [C] ✔
1G:27 [ASN] 1B:56 [G] BJ:10 [ASN] B7:53 [U] ✔
1G:27 [ASN] 1B:57 [A] BJ:10 [ASN] B7:54 [A] ✔
1G:91 [ARG] 1B:42 [C] BJ:71 [HIS] B7:39 [C] ✔
1G:67 [LYS] 1B:42 [C] BJ:47 [THR] B7:39 [C] ✔
1G:93 [THR] 1B:42 [C] BJ:73 [THR] B7:39 [C] ✔
1G:93 [THR] 1B:43 [C] BJ:73 [THR] B7:40 [U] ✔
1G:29 [TRP] 1B:32 [C] BJ:12 [MET] B7:30 [C] ❌ 7O7Y_BJ_B7
1G:96 [ARG] 1B:33 [G] BJ:76 [GLY] B7:31 [G] ❌ 7O7Y_BJ:76, 7O7Y_B7:31 no longer at interface
1G:96 [ARG] 1B:44 [G] BJ:76 [GLY] B7:41 [G] ❌ 7O7Y_BJ:76, 7O7Y_B7:41 no longer at interface
1G:98 [ARG] 1B:44 [G] BJ:78 [LYS] B7:41 [G] ❌ 7O7Y_BJ:78, 7O7Y_B7:41 no longer at interface
1G:29 [TRP] 1B:30 [C] BJ:12 [MET] B7:28 [C] ❌ 4Y4O_1B:30 no longer at interface
1G:163 [ALA] 1B:19 [G] BJ:156 [ARG] B7:17 [C] ❌ 4Y4O_1G:163, 4Y4O_1B:19 no longer at interface
1G:96 [ARG] 1B:32 [C] BJ:76 [GLY] B7:30 [C] ❌ 7O7Y_BJ:76 no longer at interface
1G:96 [ARG] 1B:45 [A] BJ:76 [GLY] B7:42 [A] ❌ 7O7Y_BJ:76 no longer at interface
1G:98 [ARG] 1B:43 [C] BJ:78 [LYS] B7:40 [U] ❌ 7O7Y_BJ:78 no longer at interface
1G:33 [ARG] 1B:31 [C] BJ:16 [ARG] B7:29 [C] ❌ 4Y4O_1G:33 no longer at interface
1G:33 [ARG] 1B:32 [C] BJ:16 [ARG] B7:30 [C] ❌ 4Y4O_1G:33 no longer at interface
1G:35 [GLU] 1B:45 [A] BJ:18 [ARG] B7:42 [A] ❌ 4Y4O_1G:35 no longer at interface
1G:94 [LEU] 1B:43 [C] BJ:74 [VAL] B7:40 [U] ❌ 4Y4O_1G:94 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L5 5S ribosomal RNA 0.79 1.41 0.28 0.76 0.76 0.67 0.69 0.86 0.98 0.29 0.92


Other pairs involving 4Y4O_1G_1B or 7O7Y_BJ_B7

Total number of entries: 13

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_D_8 7O7Y_BJ_B7 0.86 0.98 0.79 0.57 Ribosomal protein L5 5S ribosomal RNA compare
1VQ8_D_9 7O7Y_BJ_B7 0.75 0.92 0.93 0.39 Ribosomal protein L5 5S ribosomal RNA compare
1VQ8_D_9 4Y4O_1G_1B 0.78 0.81 1.52 0.33 Ribosomal protein L5 5S ribosomal RNA compare
7ASM_F_B 7O7Y_BJ_B7 0.64 0.81 1.22 0.36 Ribosomal protein L5 5S ribosomal RNA compare
1YHQ_D_9 7O7Y_BJ_B7 0.76 0.92 0.87 0.39 Ribosomal protein L5 5S ribosomal RNA compare
1YHQ_D_9 4Y4O_1G_1B 0.79 0.81 1.45 0.33 Ribosomal protein L5 5S ribosomal RNA compare
7O7Y_BJ_B7 7RYG_F_B 0.97 0.76 1.11 0.47 Ribosomal protein L5 5S ribosomal RNA compare
4Y4O_1G_1B 7ASM_F_B 0.51 0.91 1.54 0.55 Ribosomal protein L5 5S ribosomal RNA compare
4Y4O_1G_1B 6S0Z_F_B 0.87 0.92 0.97 0.53 Ribosomal protein L5 5S ribosomal RNA compare
4Y4O_1G_1B 7RYG_F_B 0.85 0.91 0.99 0.59 Ribosomal protein L5 5S ribosomal RNA compare
4Y4O_1G_1B 7O7Y_BJ_B7 0.86 0.79 1.41 0.28 Ribosomal protein L5 5S ribosomal RNA compare
4Y4O_1G_1B 6AZ3_D_8 0.89 0.8 1.42 0.28 Ribosomal protein L5 5S ribosomal RNA compare
6S0Z_F_B 7O7Y_BJ_B7 0.91 0.78 1.13 0.29 Ribosomal protein L5 5S ribosomal RNA compare