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All interfaces > All interologs > Interface groups > group116 > 4Y4O_1G_1B vs 7RYG_F_B

Interface analysis


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Common contacts -

4Y4O_1G
4Y4O_1B
7RYG_F
7RYG_B
Conserved?
1G:29 [TRP] 1B:54 [G] F:26 [MET] B:52 [G] ✔
1G:29 [TRP] 1B:55 [U] F:26 [MET] B:53 [U] ✔
1G:29 [TRP] 1B:57 [A] F:26 [MET] B:55 [A] ✔
1G:69 [ALA] 1B:41 [U] F:66 [VAL] B:39 [C] ✔
1G:69 [ALA] 1B:42 [C] F:66 [VAL] B:40 [C] ✔
1G:92 [VAL] 1B:42 [C] F:89 [VAL] B:40 [C] ✔
1G:66 [GLN] 1B:42 [C] F:63 [GLN] B:40 [C] ✔
1G:66 [GLN] 1B:43 [C] F:63 [GLN] B:41 [C] ✔
1G:68 [PRO] 1B:42 [C] F:65 [PRO] B:40 [C] ✔
1G:30 [GLU] 1B:57 [A] F:27 [GLU] B:55 [A] ✔
1G:95 [ARG] 1B:43 [C] F:92 [ARG] B:41 [C] ✔
1G:95 [ARG] 1B:45 [A] F:92 [ARG] B:43 [A] ✔
1G:70 [VAL] 1B:41 [U] F:67 [VAL] B:39 [C] ✔
1G:28 [VAL] 1B:54 [G] F:25 [VAL] B:52 [G] ✔
1G:28 [VAL] 1B:55 [U] F:25 [VAL] B:53 [U] ✔
1G:27 [ASN] 1B:55 [U] F:24 [ASN] B:53 [U] ✔
1G:27 [ASN] 1B:56 [G] F:24 [ASN] B:54 [G] ✔
1G:27 [ASN] 1B:57 [A] F:24 [ASN] B:55 [A] ✔
1G:91 [ARG] 1B:42 [C] F:88 [LYS] B:40 [C] ✔
1G:72 [ARG] 1B:41 [U] F:69 [LEU] B:39 [C] ✔
1G:67 [LYS] 1B:42 [C] F:64 [LYS] B:40 [C] ✔
1G:93 [THR] 1B:42 [C] F:90 [THR] B:40 [C] ✔
1G:93 [THR] 1B:43 [C] F:90 [THR] B:41 [C] ✔
1G:29 [TRP] 1B:32 [C] F:26 [MET] B:30 [U] ❌ 7RYG_F_B
1G:29 [TRP] 1B:31 [C] F:26 [MET] B:29 [C] ❌ 7RYG_B:29 no longer at interface
1G:96 [ARG] 1B:33 [G] F:93 [GLY] B:31 [G] ❌ 7RYG_F:93, 7RYG_B:31 no longer at interface
1G:96 [ARG] 1B:44 [G] F:93 [GLY] B:42 [G] ❌ 7RYG_F:93, 7RYG_B:42 no longer at interface
1G:98 [ARG] 1B:44 [G] F:95 [GLN] B:42 [G] ❌ 7RYG_F:95, 7RYG_B:42 no longer at interface
1G:29 [TRP] 1B:30 [C] F:26 [MET] B:28 [C] ❌ 4Y4O_1B:30 no longer at interface
1G:96 [ARG] 1B:32 [C] F:93 [GLY] B:30 [U] ❌ 7RYG_F:93 no longer at interface
1G:96 [ARG] 1B:45 [A] F:93 [GLY] B:43 [A] ❌ 7RYG_F:93 no longer at interface
1G:98 [ARG] 1B:43 [C] F:95 [GLN] B:41 [C] ❌ 7RYG_F:95 no longer at interface
1G:71 [THR] 1B:41 [U] F:68 [THR] B:39 [C] ❌ 7RYG_F:68 no longer at interface
1G:164 [GLU] 1B:57 [A] F:161 [ARG] B:55 [A] ❌ 4Y4O_1G:164 no longer at interface
1G:33 [ARG] 1B:32 [C] F:30 [ARG] B:30 [U] ❌ 4Y4O_1G:33 no longer at interface
1G:94 [LEU] 1B:43 [C] F:91 [LEU] B:41 [C] ❌ 4Y4O_1G:94 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L5 5S ribosomal RNA 0.91 0.99 0.59 0.92 0.83 0.82 0.9 0.85 0.82 0.25 0.92


Other pairs involving 4Y4O_1G_1B or 7RYG_F_B

Total number of entries: 13

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_D_8 7RYG_F_B 0.97 0.78 0.92 0.41 Ribosomal protein L5 5S ribosomal RNA compare
1VQ8_D_9 4Y4O_1G_1B 0.78 0.81 1.52 0.33 Ribosomal protein L5 5S ribosomal RNA compare
1VQ8_D_9 7RYG_F_B 0.81 0.76 1.39 0.59 Ribosomal protein L5 5S ribosomal RNA compare
7ASM_F_B 7RYG_F_B 0.65 0.89 1.25 0.64 Ribosomal protein L5 5S ribosomal RNA compare
1YHQ_D_9 4Y4O_1G_1B 0.79 0.81 1.45 0.33 Ribosomal protein L5 5S ribosomal RNA compare
1YHQ_D_9 7RYG_F_B 0.83 0.76 1.32 0.59 Ribosomal protein L5 5S ribosomal RNA compare
7O7Y_BJ_B7 7RYG_F_B 0.97 0.76 1.11 0.47 Ribosomal protein L5 5S ribosomal RNA compare
4Y4O_1G_1B 7ASM_F_B 0.51 0.91 1.54 0.55 Ribosomal protein L5 5S ribosomal RNA compare
4Y4O_1G_1B 6S0Z_F_B 0.87 0.92 0.97 0.53 Ribosomal protein L5 5S ribosomal RNA compare
4Y4O_1G_1B 7RYG_F_B 0.85 0.91 0.99 0.59 Ribosomal protein L5 5S ribosomal RNA compare
4Y4O_1G_1B 7O7Y_BJ_B7 0.86 0.79 1.41 0.28 Ribosomal protein L5 5S ribosomal RNA compare
4Y4O_1G_1B 6AZ3_D_8 0.89 0.8 1.42 0.28 Ribosomal protein L5 5S ribosomal RNA compare
6S0Z_F_B 7RYG_F_B 0.93 0.9 0.9 0.6 Ribosomal protein L5 5S ribosomal RNA compare