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All interfaces > All interologs > Interface groups > group116 > 6AZ3_D_8

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Licorice
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Conservation*

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Rim - Core

Contacts -

6AZ3_D
6AZ3_8
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
D:9 [ASN] 8:54 [U] 3.85 8:29 [A] 81.9
D:9 [ASN] 8:55 [U] 4.8 8:28 [C] 81.9
D:9 [ASN] 8:56 [A] 2.39 sugar:SC 81.9
D:10 [PRO] 8:54 [U] 4.38 8:29 [A] 39.9
D:11 [MET] 8:30 [C] 4.07 8:53 [G] 90.2
D:11 [MET] 8:31 [C] 4.28 8:50 [G] 90.2
D:11 [MET] 8:53 [G] 3.53 8:30 [C] 90.2
D:11 [MET] 8:54 [U] 3.61 8:29 [A] 90.2
D:11 [MET] 8:56 [A] 3.43 90.2
D:12 [ARG] 8:56 [A] 3.27 54.7
D:17 [LYS] 8:31 [C] 4.83 8:50 [G] 42.2
D:45 [GLN] 8:41 [C] 3.19 50.1
D:45 [GLN] 8:42 [C] 4.19 50.1
D:46 [THR] 8:41 [C] 2.28 sugar:BB 70.4
D:47 [PRO] 8:41 [C] 4.4 71.0
D:48 [VAL] 8:41 [C] 3.47 68.8
D:70 [HIS] 8:41 [C] 4.71 58.3
D:71 [CYS] 8:41 [C] 3.64 78.7
D:72 [THR] 8:41 [C] 2.86 base:BB 99.0
D:72 [THR] 8:42 [C] 3.33 99.0
D:74 [ARG] 8:42 [C] 2.29 base:SC 97.2
D:74 [ARG] 8:44 [A] 3.15 8:40 [U] base/AA stacks 97.2
D:136 [ARG] 8:30 [C] 4.28 8:53 [G] 50.1
D:136 [ARG] 8:31 [C] 3.6 8:50 [G] 50.1
D:136 [ARG] 8:32 [A] 3.69 8:49 [U] 50.1
D:136 [ARG] 8:56 [A] 3.52 50.1
D:137 [GLY] 8:30 [C] 3.23 8:53 [G] 97.3
D:137 [GLY] 8:31 [C] 3.13 8:50 [G] 97.3
D:137 [GLY] 8:56 [A] 4.34 97.3
D:137 [GLY] 8:57 [A] 4.6 97.3
D:138 [GLU] 8:30 [C] 4.73 8:53 [G] 31.6
D:138 [GLU] 8:31 [C] 4.63 8:50 [G] 31.6
D:139 [ARG] 8:30 [C] 2.73 8:53 [G] 96.3
D:139 [ARG] 8:31 [C] 3.51 8:50 [G] 96.3
D:139 [ARG] 8:45 [U] 3.1 8:39 [G] 96.3
D:139 [ARG] 8:46 [U] 2.09 96.3
D:140 [VAL] 8:30 [C] 4.18 8:53 [G] 77.6
D:140 [VAL] 8:57 [A] 3.95 77.6
D:140 [VAL] 8:58 [G] 4.1 77.6
D:142 [HIS] 8:44 [A] 4.88 8:40 [U] 36.6
D:142 [HIS] 8:45 [U] 3.31 8:39 [G] 36.6
D:142 [HIS] 8:46 [U] 4.87 36.6
D:143 [ARG] 8:29 [A] 2.96 8:54 [U] 97.1
D:143 [ARG] 8:30 [C] 3.2 8:53 [G] 97.1
D:143 [ARG] 8:45 [U] 4.08 8:39 [G] 97.1
D:143 [ARG] 8:46 [U] 4.07 97.1
D:143 [ARG] 8:58 [G] 3.4 sugar:SC 97.1
D:144 [LYS] 8:45 [U] 4.27 8:39 [G] 50.2
D:144 [LYS] 8:46 [U] 3.25 50.2
D:145 [ARG] 8:29 [A] 3.76 8:54 [U] 41.5
D:145 [ARG] 8:46 [U] 4.98 41.5
D:146 [LYS] 8:7 [A] 3.66 8:116 [U] 30.9
D:146 [LYS] 8:28 [C] 2.87 8:55 [U] sugar:SC 30.9
D:146 [LYS] 8:29 [A] 3.55 8:54 [U] 30.9
D:146 [LYS] 8:58 [G] 4.31 30.9
D:148 [SER] 8:58 [G] 2.76 38.8
D:148 [SER] 8:59 [C] 3.06 8:23 [G] 38.8
D:149 [ARG] 8:17 [U] 4.02 8:66 [A] 58.0
D:149 [ARG] 8:18 [U] 2.44 8:64 [A] 58.0
D:149 [ARG] 8:57 [A] 4.2 58.0
D:149 [ARG] 8:58 [G] 3.23 58.0
D:150 [VAL] 8:57 [A] 3.76 68.6
D:151 [GLY] 8:57 [A] 3.49 66.7
D:151 [GLY] 8:58 [G] 3.99 66.7
D:152 [HIS] 8:19 [G] 3.6 8:63 [C] 30.8
D:152 [HIS] 8:20 [A] 3.13 8:62 [U] 30.8
D:153 [SER] 8:56 [A] 3.76 36.3
D:153 [SER] 8:57 [A] 3.24 36.3
D:154 [HIS] 8:56 [A] 3.09 base:SC 80.1
D:154 [HIS] 8:57 [A] 3.63 80.1

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group116 6AZ3_D_8 D: 60s ribosomal protein l11 (l5, l16), Leishmania donovani (natural) 8: rRNA 5s, Leishmania donovani (natural) A0A3S5H5A8 Ribosomal protein L5 5S ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_D_8 7O7Y_BJ_B7 0.86 0.98 0.79 0.57 Ribosomal protein L5 5S ribosomal RNA compare
6AZ3_D_8 7RYG_F_B 0.97 0.78 0.92 0.41 Ribosomal protein L5 5S ribosomal RNA compare
6AZ3_D_8 7ASM_F_B 0.71 0.81 1.32 0.36 Ribosomal protein L5 5S ribosomal RNA compare
6AZ3_D_8 6S0Z_F_B 0.96 0.79 1.18 0.29 Ribosomal protein L5 5S ribosomal RNA compare
1VQ8_D_9 6AZ3_D_8 0.78 0.91 1.24 0.4 Ribosomal protein L5 5S ribosomal RNA compare
1YHQ_D_9 6AZ3_D_8 0.79 0.91 1.17 0.4 Ribosomal protein L5 5S ribosomal RNA compare
4Y4O_1G_1B 6AZ3_D_8 0.89 0.8 1.42 0.28 Ribosomal protein L5 5S ribosomal RNA compare