Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 6S0Z_F
|
6S0Z_B
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| F:5 [LYS] | B:31 [G] | 3.47 | B:47 [C] | 20.6 | ||
| F:23 [SER] | B:55 [A] | 3.9 | B:53 [U] | 50.6 | ||
| F:24 [SER] | B:53 [U] | 2.82 | B:55 [A] | 95.0 | ||
| F:24 [SER] | B:54 [U] | 3.58 | B:56 [A] | 95.0 | ||
| F:24 [SER] | B:55 [A] | 4.21 | B:53 [U] | 95.0 | ||
| F:25 [VAL] | B:52 [G] | 4.57 | 32.6 | |||
| F:25 [VAL] | B:53 [U] | 3.87 | B:55 [A] | 32.6 | ||
| F:26 [MET] | B:29 [C] | 4.48 | B:49 [G] | 54.8 | ||
| F:26 [MET] | B:52 [G] | 3.15 | 54.8 | |||
| F:26 [MET] | B:53 [U] | 3.45 | B:55 [A] | 54.8 | ||
| F:26 [MET] | B:55 [A] | 3.32 | B:53 [U] | 54.8 | ||
| F:27 [GLU] | B:55 [A] | 3.27 | B:53 [U] | 42.1 | ||
| F:63 [GLN] | B:40 [C] | 2.81 | base:SC | 96.1 | ||
| F:63 [GLN] | B:41 [C] | 3.17 | 96.1 | |||
| F:64 [LYS] | B:39 [G] | 4.99 | 76.0 | |||
| F:64 [LYS] | B:40 [C] | 2.96 | sugar:BB | 76.0 | ||
| F:65 [PRO] | B:40 [C] | 4.25 | 79.8 | |||
| F:66 [LEU] | B:39 [G] | 3.75 | 5.9 | |||
| F:66 [LEU] | B:40 [C] | 3.54 | 5.9 | |||
| F:67 [VAL] | B:39 [G] | 4.87 | 7.7 | |||
| F:69 [LYS] | B:39 [G] | 3.86 | 51.3 | |||
| F:88 [LYS] | B:40 [C] | 3.22 | 65.0 | |||
| F:89 [VAL] | B:40 [C] | 4.17 | 91.3 | |||
| F:90 [THR] | B:40 [C] | 3.32 | 99.0 | |||
| F:90 [THR] | B:41 [C] | 3.87 | 99.0 | |||
| F:92 [ARG] | B:40 [C] | 4.87 | 98.8 | |||
| F:92 [ARG] | B:41 [C] | 2.49 | base:SC, base:SC, base:SC | 98.8 | ||
| F:92 [ARG] | B:43 [A] | 3.21 | B:38 [U] | base/AA stacks | 98.8 | |
| F:94 [GLU] | B:31 [G] | 4.82 | B:47 [C] | 48.5 | ||
| F:94 [GLU] | B:32 [U] | 4.54 | B:46 [A] | 48.5 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group116 | 6S0Z_F_B | F: 50s ribosomal protein l5, Staphylococcus aureus (natural) B: 5s ribosomal RNA, Staphylococcus aureus (natural) | W8TUC3 | Ribosomal protein L5 | 5S ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 7
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 6AZ3_D_8 | 6S0Z_F_B | 0.96 | 0.79 | 1.18 | 0.29 | Ribosomal protein L5 | 5S ribosomal RNA | compare |
| 6S0Z_F_B | 7O7Y_BJ_B7 | 0.91 | 0.78 | 1.13 | 0.29 | Ribosomal protein L5 | 5S ribosomal RNA | compare |
| 1VQ8_D_9 | 6S0Z_F_B | 0.87 | 0.79 | 1.51 | 0.47 | Ribosomal protein L5 | 5S ribosomal RNA | compare |
| 1YHQ_D_9 | 6S0Z_F_B | 0.87 | 0.79 | 1.43 | 0.47 | Ribosomal protein L5 | 5S ribosomal RNA | compare |
| 4Y4O_1G_1B | 6S0Z_F_B | 0.87 | 0.92 | 0.97 | 0.53 | Ribosomal protein L5 | 5S ribosomal RNA | compare |
| 6S0Z_F_B | 7RYG_F_B | 0.93 | 0.9 | 0.9 | 0.6 | Ribosomal protein L5 | 5S ribosomal RNA | compare |
| 6S0Z_F_B | 7ASM_F_B | 0.65 | 0.96 | 1.26 | 0.91 | Ribosomal protein L5 | 5S ribosomal RNA | compare |