Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 7ASM_F
|
7ASM_B
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| F:23 [SER] | B:55 [A] | 4.64 | 43.7 | |||
| F:24 [SER] | B:53 [U] | 3.52 | B:27 [A] | 97.9 | ||
| F:24 [SER] | B:54 [U] | 3.9 | B:26 [C] | 97.9 | ||
| F:24 [SER] | B:55 [A] | 3.75 | 97.9 | |||
| F:26 [MET] | B:53 [U] | 3.65 | B:27 [A] | 57.9 | ||
| F:26 [MET] | B:55 [A] | 3.47 | 57.9 | |||
| F:27 [GLU] | B:55 [A] | 3.57 | 59.8 | |||
| F:63 [GLN] | B:40 [C] | 3.85 | 96.4 | |||
| F:64 [LYS] | B:40 [C] | 3.24 | sugar:BB | 66.3 | ||
| F:66 [LEU] | B:39 [G] | 3.57 | 20.7 | |||
| F:66 [LEU] | B:40 [C] | 4.03 | 20.7 | |||
| F:89 [VAL] | B:40 [C] | 4.57 | 89.0 | |||
| F:90 [THR] | B:40 [C] | 3.5 | base:BB | 99.0 | ||
| F:90 [THR] | B:41 [C] | 3.54 | 99.0 | |||
| F:92 [ARG] | B:41 [C] | 4.89 | 98.1 | |||
| F:93 [GLY] | B:41 [C] | 4.33 | 57.5 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group116 | 7ASM_F_B | F: 50s ribosomal protein l5, Staphylococcus aureus (natural) B: 5s rRNA, Staphylococcus aureus (genetically engineered) | Q2FW18 | Ribosomal protein L5 | 5S ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 7
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 6AZ3_D_8 | 7ASM_F_B | 0.71 | 0.81 | 1.32 | 0.36 | Ribosomal protein L5 | 5S ribosomal RNA | compare |
| 1VQ8_D_9 | 7ASM_F_B | 0.52 | 0.78 | 1.79 | 0.45 | Ribosomal protein L5 | 5S ribosomal RNA | compare |
| 7ASM_F_B | 7O7Y_BJ_B7 | 0.64 | 0.81 | 1.22 | 0.36 | Ribosomal protein L5 | 5S ribosomal RNA | compare |
| 7ASM_F_B | 7RYG_F_B | 0.65 | 0.89 | 1.25 | 0.64 | Ribosomal protein L5 | 5S ribosomal RNA | compare |
| 1YHQ_D_9 | 7ASM_F_B | 0.51 | 0.79 | 1.67 | 0.45 | Ribosomal protein L5 | 5S ribosomal RNA | compare |
| 4Y4O_1G_1B | 7ASM_F_B | 0.51 | 0.91 | 1.54 | 0.55 | Ribosomal protein L5 | 5S ribosomal RNA | compare |
| 6S0Z_F_B | 7ASM_F_B | 0.65 | 0.96 | 1.26 | 0.91 | Ribosomal protein L5 | 5S ribosomal RNA | compare |