Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show interface as licoriceCommon contacts -
7ASM_F
|
7ASM_B
|
7RYG_F
|
7RYG_B
|
Conserved?
|
---|---|---|---|---|
F:26 [MET] | B:53 [U] | F:26 [MET] | B:53 [U] | ✔ |
F:26 [MET] | B:55 [A] | F:26 [MET] | B:55 [A] | ✔ |
F:89 [VAL] | B:40 [C] | F:89 [VAL] | B:40 [C] | ✔ |
F:66 [LEU] | B:39 [G] | F:66 [VAL] | B:39 [C] | ✔ |
F:66 [LEU] | B:40 [C] | F:66 [VAL] | B:40 [C] | ✔ |
F:27 [GLU] | B:55 [A] | F:27 [GLU] | B:55 [A] | ✔ |
F:63 [GLN] | B:40 [C] | F:63 [GLN] | B:40 [C] | ✔ |
F:92 [ARG] | B:41 [C] | F:92 [ARG] | B:41 [C] | ✔ |
F:64 [LYS] | B:40 [C] | F:64 [LYS] | B:40 [C] | ✔ |
F:24 [SER] | B:53 [U] | F:24 [ASN] | B:53 [U] | ✔ |
F:24 [SER] | B:54 [U] | F:24 [ASN] | B:54 [G] | ✔ |
F:24 [SER] | B:55 [A] | F:24 [ASN] | B:55 [A] | ✔ |
F:90 [THR] | B:40 [C] | F:90 [THR] | B:40 [C] | ✔ |
F:90 [THR] | B:41 [C] | F:90 [THR] | B:41 [C] | ✔ |
F:63 [GLN] | B:41 [C] | F:63 [GLN] | B:41 [C] | ❌ 7ASM_F_B |
F:25 [VAL] | B:52 [G] | F:25 [VAL] | B:52 [G] | ❌ 7ASM_F:25, 7ASM_B:52 no longer at interface |
F:26 [MET] | B:52 [G] | F:26 [MET] | B:52 [G] | ❌ 7ASM_B:52 no longer at interface |
F:26 [MET] | B:28 [C] | F:26 [MET] | B:28 [C] | ❌ 7ASM_B:28 no longer at interface |
F:30 [LYS] | B:30 [U] | F:30 [ARG] | B:30 [U] | ❌ 7ASM_F:30, 7ASM_B:30 no longer at interface |
F:92 [ARG] | B:43 [A] | F:92 [ARG] | B:43 [A] | ❌ 7ASM_B:43 no longer at interface |
F:93 [GLY] | B:41 [C] | F:93 [GLY] | B:41 [C] | ❌ 7RYG_F:93 no longer at interface |
F:23 [SER] | B:55 [A] | F:23 [LYS] | B:55 [A] | ❌ 7RYG_F:23 no longer at interface |
F:161 [ASN] | B:55 [A] | F:161 [ARG] | B:55 [A] | ❌ 7ASM_F:161 no longer at interface |
F:25 [VAL] | B:53 [U] | F:25 [VAL] | B:53 [U] | ❌ 7ASM_F:25 no longer at interface |
F:65 [PRO] | B:40 [C] | F:65 [PRO] | B:40 [C] | ❌ 7ASM_F:65 no longer at interface |
F:67 [VAL] | B:39 [G] | F:67 [VAL] | B:39 [C] | ❌ 7ASM_F:67 no longer at interface |
F:69 [LYS] | B:39 [G] | F:69 [LEU] | B:39 [C] | ❌ 7ASM_F:69 no longer at interface |
F:88 [LYS] | B:40 [C] | F:88 [LYS] | B:40 [C] | ❌ 7ASM_F:88 no longer at interface |
F:91 [LEU] | B:41 [C] | F:91 [LEU] | B:41 [C] | ❌ 7ASM_F:91 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Ribosomal protein L5 | 5S ribosomal RNA | 0.89 | 1.25 | 0.64 | 0.9 | 0.85 | 0.82 | 1.0 | 0.65 | 0.69 | 0.40 | 0.93 |
Other pairs involving 7ASM_F_B or 7RYG_F_B
Total number of entries: 13