RNAprotDB

All interfaces > All interologs > Interface groups > group116 > 7O7Y_BJ_B7

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

7O7Y_BJ
7O7Y_B7
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
BJ:10 [ASN] B7:52 [C] 3.24 B7:27 [G] sugar:SC 82.86
BJ:10 [ASN] B7:53 [U] 3.92 B7:26 [C] 82.86
BJ:10 [ASN] B7:54 [A] 3.5 base/AA stacks 82.86
BJ:11 [PRO] B7:51 [G] 4.39 B7:28 [C] 45.59
BJ:11 [PRO] B7:52 [C] 3.77 B7:27 [G] 45.59
BJ:12 [MET] B7:28 [C] 3.85 B7:51 [G] 90.22
BJ:12 [MET] B7:29 [C] 3.84 B7:48 [G] 90.22
BJ:12 [MET] B7:51 [G] 3.34 B7:28 [C] 90.22
BJ:12 [MET] B7:52 [C] 3.54 B7:27 [G] 90.22
BJ:12 [MET] B7:54 [A] 3.44 90.22
BJ:13 [ARG] B7:54 [A] 3.27 sugar:SC 56.91
BJ:16 [ARG] B7:29 [C] 4.78 B7:48 [G] 36.0
BJ:16 [ARG] B7:30 [C] 3.43 B7:47 [G] 36.0
BJ:18 [ARG] B7:42 [A] 3.53 B7:38 [U] sugar:SC 39.49
BJ:46 [GLN] B7:39 [C] 3.26 40.83
BJ:46 [GLN] B7:40 [U] 3.3 40.83
BJ:47 [THR] B7:39 [C] 2.66 sugar:BB 67.92
BJ:48 [PRO] B7:39 [C] 4.29 77.04
BJ:49 [VAL] B7:39 [C] 3.18 64.91
BJ:71 [HIS] B7:39 [C] 4.63 56.16
BJ:72 [CYS] B7:39 [C] 3.2 83.35
BJ:73 [THR] B7:39 [C] 2.62 base:BB 99.0
BJ:73 [THR] B7:40 [U] 3.35 99.0
BJ:74 [VAL] B7:40 [U] 4.71 78.71
BJ:75 [ARG] B7:40 [U] 2.58 base:SC, base:SC 98.0
BJ:75 [ARG] B7:42 [A] 3.29 B7:38 [U] base/AA stacks 98.0
BJ:137 [PRO] B7:28 [C] 3.82 B7:51 [G] 57.69
BJ:137 [PRO] B7:29 [C] 3.77 B7:48 [G] 57.69
BJ:137 [PRO] B7:54 [A] 3.5 57.69
BJ:138 [GLY] B7:28 [C] 2.94 B7:51 [G] 98.9
BJ:138 [GLY] B7:29 [C] 3.19 B7:48 [G] 98.9
BJ:138 [GLY] B7:54 [A] 4.57 98.9
BJ:138 [GLY] B7:55 [A] 4.96 98.9
BJ:139 [PHE] B7:28 [C] 4.94 B7:51 [G] 16.3
BJ:139 [PHE] B7:29 [C] 4.78 B7:48 [G] 16.3
BJ:140 [SER] B7:28 [C] 4.03 B7:51 [G] 95.02
BJ:140 [SER] B7:29 [C] 3.11 B7:48 [G] 95.02
BJ:140 [SER] B7:42 [A] 3.96 B7:38 [U] 95.02
BJ:140 [SER] B7:43 [U] 3.45 B7:37 [G] 95.02
BJ:141 [ILE] B7:28 [C] 3.73 B7:51 [G] 76.15
BJ:141 [ILE] B7:55 [A] 3.91 76.15
BJ:141 [ILE] B7:56 [G] 3.44 76.15
BJ:143 [ASP] B7:42 [A] 3.27 B7:38 [U] sugar:SC 33.73
BJ:143 [ASP] B7:43 [U] 3.66 B7:37 [G] 33.73
BJ:144 [LYS] B7:27 [G] 3.6 B7:52 [C] 97.97
BJ:144 [LYS] B7:28 [C] 3.33 B7:51 [G] 97.97
BJ:144 [LYS] B7:43 [U] 3.54 B7:37 [G] 97.97
BJ:144 [LYS] B7:44 [C] 3.48 97.97
BJ:145 [LYS] B7:43 [U] 3.95 B7:37 [G] 49.7
BJ:145 [LYS] B7:44 [C] 2.99 49.7
BJ:146 [ARG] B7:5 [A] 4.69 B7:114 [U] 44.89
BJ:146 [ARG] B7:26 [C] 4.71 B7:53 [U] 44.89
BJ:146 [ARG] B7:27 [G] 2.35 B7:52 [C] 44.89
BJ:146 [ARG] B7:44 [C] 4.39 44.89
BJ:147 [ARG] B7:4 [U] 4.5 B7:115 [A] 16.07
BJ:147 [ARG] B7:5 [A] 3.41 B7:114 [U] 16.07
BJ:147 [ARG] B7:26 [C] 2.98 B7:53 [U] sugar:SC 16.07
BJ:147 [ARG] B7:56 [G] 4.33 16.07
BJ:147 [ARG] B7:57 [C] 4.09 B7:21 [G] 16.07
BJ:149 [GLY] B7:56 [G] 4.49 34.56
BJ:150 [CYS] B7:55 [A] 4.04 50.75
BJ:150 [CYS] B7:56 [G] 3.09 50.75
BJ:151 [ILE] B7:55 [A] 2.17 sugar:BB 74.09
BJ:151 [ILE] B7:56 [G] 3.9 74.09
BJ:152 [GLY] B7:55 [A] 3.92 44.69
BJ:152 [GLY] B7:56 [G] 4.09 44.69
BJ:153 [ALA] B7:17 [C] 3.58 B7:61 [G] 33.65
BJ:153 [ALA] B7:18 [C] 3.58 B7:60 [G] 33.65
BJ:154 [LYS] B7:18 [C] 4.4 B7:60 [G] 35.4
BJ:154 [LYS] B7:19 [C] 3.78 B7:59 [G] 35.4
BJ:154 [LYS] B7:54 [A] 3.58 35.4
BJ:154 [LYS] B7:55 [A] 3.24 35.4
BJ:155 [HIS] B7:54 [A] 2.91 sugar:SC 80.17
BJ:155 [HIS] B7:55 [A] 3.62 80.17
BJ:156 [ARG] B7:17 [C] 2.83 B7:61 [G] 57.14

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group116 7O7Y_BJ_B7 BJ: Ribosomal protein l11, Oryctolagus cuniculus (natural) B7: 5s rRNA, Oryctolagus cuniculus (natural) G1TUB8 Ribosomal protein L5 5S ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_D_8 7O7Y_BJ_B7 0.86 0.98 0.79 0.57 Ribosomal protein L5 5S ribosomal RNA compare
1VQ8_D_9 7O7Y_BJ_B7 0.75 0.92 0.93 0.39 Ribosomal protein L5 5S ribosomal RNA compare
7ASM_F_B 7O7Y_BJ_B7 0.64 0.81 1.22 0.36 Ribosomal protein L5 5S ribosomal RNA compare
1YHQ_D_9 7O7Y_BJ_B7 0.76 0.92 0.87 0.39 Ribosomal protein L5 5S ribosomal RNA compare
4Y4O_1G_1B 7O7Y_BJ_B7 0.86 0.79 1.41 0.28 Ribosomal protein L5 5S ribosomal RNA compare
6S0Z_F_B 7O7Y_BJ_B7 0.91 0.78 1.13 0.29 Ribosomal protein L5 5S ribosomal RNA compare
7O7Y_BJ_B7 7RYG_F_B 0.97 0.76 1.11 0.47 Ribosomal protein L5 5S ribosomal RNA compare