RNAprotDB

Interface analysis

Contacts -

7RYG_F	7RYG_B	Distance	Base Pair	Hbond nuc:res	Base Stacking	Residue conservation
F:24 [ASN]	B:53 [U]	3.55	B:27 [A]			89.3
F:24 [ASN]	B:54 [G]	3.78	B:26 [C]			89.3
F:24 [ASN]	B:55 [A]	3.0				89.3
F:25 [VAL]	B:52 [G]	4.29	B:28 [C]			26.32
F:25 [VAL]	B:53 [U]	4.54	B:27 [A]			26.32
F:26 [MET]	B:28 [C]	4.66	B:52 [G]			50.77
F:26 [MET]	B:52 [G]	3.38	B:28 [C]			50.77
F:26 [MET]	B:53 [U]	3.6	B:27 [A]			50.77
F:26 [MET]	B:55 [A]	3.79				50.77
F:27 [GLU]	B:55 [A]	2.63		sugar:SC		56.82
F:30 [ARG]	B:30 [U]	4.56	B:48 [A]			40.68
F:63 [GLN]	B:40 [C]	3.34				93.84
F:63 [GLN]	B:41 [C]	3.86				93.84
F:64 [LYS]	B:40 [C]	2.53		sugar:BB		68.26
F:65 [PRO]	B:40 [C]	3.74				75.51
F:66 [VAL]	B:39 [C]	3.2				29.85
F:66 [VAL]	B:40 [C]	3.7				29.85
F:67 [VAL]	B:39 [C]	2.86		base:BB		28.97
F:69 [LEU]	B:39 [C]	3.93				33.99
F:88 [LYS]	B:40 [C]	4.83				61.84
F:89 [VAL]	B:40 [C]	4.17				90.56
F:90 [THR]	B:40 [C]	3.56		base:BB		99.0
F:90 [THR]	B:41 [C]	2.96				99.0
F:91 [LEU]	B:41 [C]	4.68				97.82
F:92 [ARG]	B:41 [C]	2.91		base:SC, base:SC		98.47
F:92 [ARG]	B:43 [A]	2.77			base/AA stacks	98.47
F:161 [ARG]	B:55 [A]	4.68				19.37

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID	Structure ID	Structure description	UniProt ID	ECOD label(s)	RFAM label(s)	Is ribosome?	RCSB PDB link
group116	7RYG_F_B	F: 50s ribosomal protein l5, Acinetobacter baumannii (strain ab0057) (natural) B: 5s ribosomal RNA, Acinetobacter baumannii ab0057 (natural)	B7IA27	Ribosomal protein L5	5S ribosomal RNA	✔

Interologs

Interface 1	Interface 2	Percentage conservation	Interface TM-score	Interface RMSD	Percentage identity	Common ECOD label(s)	Common RFAM label(s)	Explore both interfaces
6AZ3_D_8	7RYG_F_B	0.97	0.78	0.92	0.41	Ribosomal protein L5	5S ribosomal RNA	compare
1VQ8_D_9	7RYG_F_B	0.81	0.76	1.39	0.59	Ribosomal protein L5	5S ribosomal RNA	compare
7ASM_F_B	7RYG_F_B	0.65	0.89	1.25	0.64	Ribosomal protein L5	5S ribosomal RNA	compare
1YHQ_D_9	7RYG_F_B	0.83	0.76	1.32	0.59	Ribosomal protein L5	5S ribosomal RNA	compare
7O7Y_BJ_B7	7RYG_F_B	0.97	0.76	1.11	0.47	Ribosomal protein L5	5S ribosomal RNA	compare
4Y4O_1G_1B	7RYG_F_B	0.85	0.91	0.99	0.59	Ribosomal protein L5	5S ribosomal RNA	compare
6S0Z_F_B	7RYG_F_B	0.93	0.9	0.9	0.6	Ribosomal protein L5	5S ribosomal RNA	compare

Interface 1

Interface 2

Percentage conservation

Interface TM-score

Interface RMSD

Percentage identity

Common ECOD label(s)

Common RFAM label(s)

Explore both interfaces

6AZ3_D_8

7RYG_F_B

0.97