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All interfaces > All interologs > Interface groups > group117 > 1VQ8_V_0

Interface analysis

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Licorice
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RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1VQ8_V
1VQ8_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
V:1 [THR] 0:93 [C] 2.98 0:81 [G] 76.52
V:1 [THR] 0:94 [G] 3.6 76.52
V:2 [VAL] 0:93 [C] 4.74 0:81 [G] 43.62
V:2 [VAL] 0:96 [A] 4.96 43.62
V:4 [HIS] 0:94 [G] 4.34 63.78
V:4 [HIS] 0:95 [A] 4.75 63.78
V:4 [HIS] 0:96 [A] 3.44 base/AA stacks 63.78
V:5 [VAL] 0:73 [C] 3.56 0:104 [G] 4.64
V:5 [VAL] 0:74 [A] 3.64 0:103 [U] 4.64
V:6 [GLN] 0:96 [A] 3.77 32.55
V:7 [GLU] 0:96 [A] 3.43 63.37
V:9 [ARG] 0:73 [C] 2.97 0:104 [G] sugar:SC 77.62
V:9 [ARG] 0:74 [A] 3.28 0:103 [U] 77.62
V:34 [GLN] 0:57 [C] 3.08 0:89 [G] 35.42
V:34 [GLN] 0:58 [C] 3.89 0:88 [G] 35.42
V:41 [GLU] 0:57 [C] 4.65 0:89 [G] 65.25
V:42 [ASN] 0:91 [G] 3.92 0:83 [C] 74.5
V:43 [PRO] 0:57 [C] 3.29 0:89 [G] 67.08
V:43 [PRO] 0:90 [A] 4.55 67.08
V:43 [PRO] 0:91 [G] 4.0 0:83 [C] 67.08
V:44 [GLY] 0:91 [G] 3.52 0:83 [C] sugar:BB 56.05
V:44 [GLY] 0:92 [G] 3.76 0:82 [C] 56.05
V:46 [ILE] 0:57 [C] 3.3 0:89 [G] 75.09
V:47 [LYS] 0:57 [C] 3.89 0:89 [G] 69.42
V:47 [LYS] 0:83 [C] 3.52 0:91 [G] sugar:SC 69.42
V:48 [GLU] 0:92 [G] 4.26 0:82 [C] 1.38
V:48 [GLU] 0:93 [C] 4.05 0:81 [G] 1.38
V:50 [ARG] 0:55 [U] 3.52 0:64 [G] sugar:SC 90.65
V:50 [ARG] 0:56 [G] 3.18 90.65
V:50 [ARG] 0:57 [C] 4.54 0:89 [G] 90.65
V:50 [ARG] 0:68 [U] 4.62 90.65
V:50 [ARG] 0:69 [A] 2.92 base:SC 90.65
V:50 [ARG] 0:70 [A] 3.53 0:63 [U] 90.65
V:51 [LYS] 0:69 [A] 4.42 83.05
V:51 [LYS] 0:71 [G] 3.41 0:106 [A] 83.05
V:51 [LYS] 0:72 [C] 3.26 0:105 [G] 83.05
V:53 [ILE] 0:68 [U] 4.3 92.7
V:54 [ALA] 0:68 [U] 3.33 99.0
V:54 [ALA] 0:69 [A] 4.37 99.0
V:54 [ALA] 0:72 [C] 3.46 0:105 [G] 99.0
V:55 [ARG] 0:72 [C] 3.22 0:105 [G] 94.51
V:55 [ARG] 0:73 [C] 2.96 0:104 [G] 94.51
V:57 [LYS] 0:68 [U] 3.4 54.07
V:58 [THR] 0:68 [U] 3.33 base:SC, base:SC 98.86
V:58 [THR] 0:72 [C] 2.56 0:105 [G] sugar:SC 98.86
V:58 [THR] 0:73 [C] 3.28 0:104 [G] 98.86
V:58 [THR] 0:105 [G] 4.25 0:72 [C] 98.86
V:58 [THR] 0:106 [A] 4.99 0:71 [G] 98.86
V:59 [ILE] 0:73 [C] 4.56 0:104 [G] 68.67
V:62 [GLU] 0:73 [C] 2.77 0:104 [G] sugar:SC 73.47

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group117 1VQ8_V_0 V: 50s ribosomal protein l29p, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P10971 Ribosomal protein L29 (L29p) Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_V_0 1YHQ_V_0 0.99 1.0 0.27 0.9 Ribosomal protein L29 (L29p) Archaeal large subunit ribosomal RNA compare
1VQ8_V_0 7K00_x_a 0.69 0.91 2.39 0.39 Ribosomal protein L29 (L29p) compare
1VQ8_V_0 6AZ3_a_7 0.59 0.61 1.37 0.33 Ribosomal protein L29 (L29p) compare
1VQ8_V_0 4Y4O_12_1A 0.61 0.93 2.21 0.25 Ribosomal protein L29 (L29p) compare
1VQ8_V_0 7RYG_X_A 0.42 0.92 3.91 0.41 Ribosomal protein L29 (L29p) compare
1VQ8_V_0 7O7Y_Bh_B8 0.59 0.63 2.19 0.33 Ribosomal protein L29 (L29p) compare
1VQ8_V_0 6S0Z_W_A 0.70 0.93 2.86 0.53 Ribosomal protein L29 (L29p) compare