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All interfaces > All interologs > Interface groups > group117 > 1VQ8_V_0 vs 1YHQ_V_0

Interface analysis


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Common contacts -

1VQ8_V
1VQ8_0
1YHQ_V
1YHQ_0
Conserved?
V:50 [ARG] 0:55 [U] V:50 [ARG] 0:55 [U] ✔
V:50 [ARG] 0:56 [G] V:50 [ARG] 0:56 [G] ✔
V:50 [ARG] 0:57 [C] V:50 [ARG] 0:57 [C] ✔
V:50 [ARG] 0:68 [U] V:50 [ARG] 0:68 [U] ✔
V:50 [ARG] 0:69 [A] V:50 [ARG] 0:69 [A] ✔
V:50 [ARG] 0:70 [A] V:50 [ARG] 0:70 [A] ✔
V:54 [ALA] 0:68 [U] V:54 [ALA] 0:68 [U] ✔
V:54 [ALA] 0:69 [A] V:54 [ALA] 0:69 [A] ✔
V:54 [ALA] 0:72 [C] V:54 [ALA] 0:72 [C] ✔
V:6 [GLN] 0:96 [A] V:6 [GLN] 0:96 [A] ✔
V:2 [VAL] 0:93 [C] V:2 [VAL] 0:93 [C] ✔
V:2 [VAL] 0:96 [A] V:2 [VAL] 0:96 [A] ✔
V:7 [GLU] 0:96 [A] V:7 [GLU] 0:96 [A] ✔
V:57 [LYS] 0:68 [U] V:57 [LYS] 0:68 [U] ✔
V:44 [GLY] 0:91 [G] V:44 [GLY] 0:91 [G] ✔
V:44 [GLY] 0:92 [G] V:44 [GLY] 0:92 [G] ✔
V:55 [ARG] 0:72 [C] V:55 [ARG] 0:72 [C] ✔
V:55 [ARG] 0:73 [C] V:55 [ARG] 0:73 [U] ✔
V:48 [GLU] 0:92 [G] V:48 [GLU] 0:92 [G] ✔
V:48 [GLU] 0:93 [C] V:48 [GLU] 0:93 [C] ✔
V:59 [ILE] 0:73 [C] V:59 [ILE] 0:73 [U] ✔
V:9 [ARG] 0:73 [C] V:9 [ARG] 0:73 [U] ✔
V:9 [ARG] 0:74 [A] V:9 [ARG] 0:74 [G] ✔
V:34 [GLN] 0:57 [C] V:34 [GLN] 0:57 [C] ✔
V:34 [GLN] 0:58 [C] V:34 [GLN] 0:58 [C] ✔
V:41 [GLU] 0:57 [C] V:41 [GLU] 0:57 [C] ✔
V:47 [LYS] 0:57 [C] V:47 [LYS] 0:57 [C] ✔
V:47 [LYS] 0:83 [C] V:47 [LYS] 0:83 [C] ✔
V:62 [GLU] 0:73 [C] V:62 [GLU] 0:73 [U] ✔
V:53 [ILE] 0:68 [U] V:53 [ILE] 0:68 [U] ✔
V:4 [HIS] 0:94 [G] V:4 [HIS] 0:94 [G] ✔
V:4 [HIS] 0:95 [A] V:4 [HIS] 0:95 [A] ✔
V:4 [HIS] 0:96 [A] V:4 [HIS] 0:96 [A] ✔
V:1 [THR] 0:93 [C] V:1 [THR] 0:93 [C] ✔
V:1 [THR] 0:94 [G] V:1 [THR] 0:94 [G] ✔
V:5 [VAL] 0:73 [C] V:5 [VAL] 0:73 [U] ✔
V:5 [VAL] 0:74 [A] V:5 [VAL] 0:74 [G] ✔
V:51 [LYS] 0:69 [A] V:51 [LYS] 0:69 [A] ✔
V:51 [LYS] 0:71 [G] V:51 [LYS] 0:71 [G] ✔
V:51 [LYS] 0:72 [C] V:51 [LYS] 0:72 [C] ✔
V:58 [THR] 0:68 [U] V:58 [THR] 0:68 [U] ✔
V:58 [THR] 0:72 [C] V:58 [THR] 0:72 [C] ✔
V:58 [THR] 0:73 [C] V:58 [THR] 0:73 [U] ✔
V:58 [THR] 0:105 [G] V:58 [THR] 0:105 [G] ✔
V:58 [THR] 0:106 [A] V:58 [THR] 0:106 [A] ✔
V:43 [PRO] 0:57 [C] V:43 [PRO] 0:57 [C] ✔
V:43 [PRO] 0:90 [A] V:43 [PRO] 0:90 [A] ✔
V:43 [PRO] 0:91 [G] V:43 [PRO] 0:91 [G] ✔
V:42 [ASN] 0:91 [G] V:42 [ASN] 0:91 [G] ✔
V:46 [ILE] 0:57 [C] V:46 [ILE] 0:57 [C] ✔
V:1 [THR] 0:92 [G] V:1 [THR] 0:92 [G] ❌ 1VQ8_V_0
V:42 [ASN] 0:92 [G] V:42 [ASN] 0:92 [G] ❌ 1VQ8_V_0

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L29 (L29p) Archaeal large subunit ribosomal RNA 1.0 0.27 0.90 1.0 1.0 1.0 1.0 0.99 0.99 0.80 0.00


Other pairs involving 1VQ8_V_0 or 1YHQ_V_0

Total number of entries: 13

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_V_0 1YHQ_V_0 0.99 1.0 0.27 0.9 Ribosomal protein L29 (L29p) Archaeal large subunit ribosomal RNA compare
1VQ8_V_0 7K00_x_a 0.69 0.91 2.39 0.39 Ribosomal protein L29 (L29p) compare
1VQ8_V_0 6AZ3_a_7 0.59 0.61 1.37 0.33 Ribosomal protein L29 (L29p) compare
1VQ8_V_0 4Y4O_12_1A 0.61 0.93 2.21 0.25 Ribosomal protein L29 (L29p) compare
1VQ8_V_0 7RYG_X_A 0.42 0.92 3.91 0.41 Ribosomal protein L29 (L29p) compare
1VQ8_V_0 7O7Y_Bh_B8 0.59 0.63 2.19 0.33 Ribosomal protein L29 (L29p) compare
1VQ8_V_0 6S0Z_W_A 0.70 0.93 2.86 0.53 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 6AZ3_a_7 0.59 0.61 1.93 0.38 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 4Y4O_12_1A 0.63 0.93 2.13 0.25 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 7K00_x_a 0.71 0.91 2.22 0.39 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 7RYG_X_A 0.46 0.92 3.85 0.41 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 6S0Z_W_A 0.71 0.93 2.68 0.58 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 7O7Y_Bh_B8 0.59 0.63 2.24 0.29 Ribosomal protein L29 (L29p) compare