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All interfaces > All interologs > Interface groups > group117 > 1VQ8_V_0 vs 6AZ3_a_7

Interface analysis


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Common contacts -

1VQ8_V
1VQ8_0
6AZ3_a
6AZ3_7
Conserved?
V:50 [ARG] 0:55 [U] a:52 [ARG] 7:47 [C] ✔
V:50 [ARG] 0:56 [G] a:52 [ARG] 7:48 [A] ✔
V:50 [ARG] 0:57 [C] a:52 [ARG] 7:49 [G] ✔
V:50 [ARG] 0:68 [U] a:52 [ARG] 7:60 [U] ✔
V:50 [ARG] 0:69 [A] a:52 [ARG] 7:61 [A] ✔
V:50 [ARG] 0:70 [A] a:52 [ARG] 7:62 [A] ✔
V:54 [ALA] 0:68 [U] a:56 [ALA] 7:60 [U] ✔
V:54 [ALA] 0:69 [A] a:56 [ALA] 7:61 [A] ✔
V:54 [ALA] 0:72 [C] a:56 [ALA] 7:64 [U] ✔
V:6 [GLN] 0:96 [A] a:8 [LYS] 7:86 [C] ✔
V:57 [LYS] 0:68 [U] a:59 [LEU] 7:60 [U] ✔
V:55 [ARG] 0:72 [C] a:57 [ARG] 7:64 [U] ✔
V:55 [ARG] 0:73 [C] a:57 [ARG] 7:65 [G] ✔
V:9 [ARG] 0:73 [C] a:11 [ARG] 7:65 [G] ✔
V:9 [ARG] 0:74 [A] a:11 [ARG] 7:66 [G] ✔
V:34 [GLN] 0:57 [C] a:36 [GLN] 7:49 [G] ✔
V:34 [GLN] 0:58 [C] a:36 [GLN] 7:50 [U] ✔
V:47 [LYS] 0:57 [C] a:49 [ARG] 7:49 [G] ✔
V:62 [GLU] 0:73 [C] a:64 [GLN] 7:65 [G] ✔
V:53 [ILE] 0:68 [U] a:55 [ILE] 7:60 [U] ✔
V:4 [HIS] 0:96 [A] a:6 [LYS] 7:86 [C] ✔
V:5 [VAL] 0:73 [C] a:7 [ILE] 7:65 [G] ✔
V:5 [VAL] 0:74 [A] a:7 [ILE] 7:66 [G] ✔
V:51 [LYS] 0:69 [A] a:53 [LYS] 7:61 [A] ✔
V:51 [LYS] 0:71 [G] a:53 [LYS] 7:63 [G] ✔
V:51 [LYS] 0:72 [C] a:53 [LYS] 7:64 [U] ✔
V:58 [THR] 0:68 [U] a:60 [THR] 7:60 [U] ✔
V:58 [THR] 0:72 [C] a:60 [THR] 7:64 [U] ✔
V:58 [THR] 0:73 [C] a:60 [THR] 7:65 [G] ✔
V:58 [THR] 0:105 [G] a:60 [THR] 7:95 [A] ✔
V:58 [THR] 0:106 [A] a:60 [THR] 7:96 [A] ✔
V:43 [PRO] 0:57 [C] a:46 [GLY] 7:49 [G] ✔
V:43 [PRO] 0:91 [G] a:46 [GLY] 7:78 [G] ✔
V:46 [ILE] 0:57 [C] a:48 [ILE] 7:49 [G] ✔
V:2 [VAL] 0:93 [C] a:4 [HIS] 7:80 [A] ❌ 6AZ3_a_7
V:2 [VAL] 0:96 [A] a:4 [HIS] 7:86 [C] ❌ 6AZ3_a_7
V:43 [PRO] 0:90 [A] a:46 [GLY] 7:77 [A] ❌ 6AZ3_a_7
V:42 [ASN] 0:91 [G] a:45 [LEU] 7:78 [G] ❌ 6AZ3_a_7
V:42 [ASN] 0:57 [C] a:45 [LEU] 7:49 [G] ❌ 1VQ8_V_0
V:47 [LYS] 0:70 [A] a:49 [ARG] 7:62 [A] ❌ 1VQ8_V_0
V:47 [LYS] 0:58 [C] a:49 [ARG] 7:50 [U] ❌ 1VQ8_V_0
V:47 [LYS] 0:71 [G] a:49 [ARG] 7:63 [G] ❌ 1VQ8_V_0
V:47 [LYS] 0:56 [G] a:49 [ARG] 7:48 [A] ❌ 1VQ8_V_0
V:51 [LYS] 0:70 [A] a:53 [LYS] 7:62 [A] ❌ 1VQ8_V_0
V:62 [GLU] 0:106 [A] a:64 [GLN] 7:96 [A] ❌ 1VQ8_V_0
V:62 [GLU] 0:105 [G] a:64 [GLN] 7:95 [A] ❌ 1VQ8_V_0
V:4 [HIS] 0:94 [G] a:6 [LYS] 7:81 [U] ❌ 6AZ3_7:81 no longer at interface
V:4 [HIS] 0:95 [A] a:6 [LYS] 7:83 [A] ❌ 6AZ3_7:83 no longer at interface
V:1 [THR] 0:94 [G] a:3 [HIS] 7:81 [U] ❌ 6AZ3_a:3, 6AZ3_7:81 no longer at interface
V:2 [VAL] 0:97 [G] a:4 [HIS] 7:87 [A] ❌ 1VQ8_0:97 no longer at interface
V:4 [HIS] 0:97 [G] a:6 [LYS] 7:87 [A] ❌ 1VQ8_0:97 no longer at interface
V:61 [GLY] 0:107 [U] a:63 [ASN] 7:97 [U] ❌ 1VQ8_V:61, 1VQ8_0:107 no longer at interface
V:7 [GLU] 0:96 [A] a:9 [ASP] 7:86 [C] ❌ 6AZ3_a:9 no longer at interface
V:48 [GLU] 0:92 [G] a:50 [PRO] 7:79 [A] ❌ 6AZ3_a:50 no longer at interface
V:48 [GLU] 0:93 [C] a:50 [PRO] 7:80 [A] ❌ 6AZ3_a:50 no longer at interface
V:59 [ILE] 0:73 [C] a:61 [VAL] 7:65 [G] ❌ 6AZ3_a:61 no longer at interface
V:41 [GLU] 0:57 [C] a:44 [ARG] 7:49 [G] ❌ 6AZ3_a:44 no longer at interface
V:1 [THR] 0:93 [C] a:3 [HIS] 7:80 [A] ❌ 6AZ3_a:3 no longer at interface
V:24 [LYS] 0:68 [U] a:26 [LYS] 7:60 [U] ❌ 1VQ8_V:24 no longer at interface
V:31 [ARG] 0:56 [G] a:33 [ARG] 7:48 [A] ❌ 1VQ8_V:31 no longer at interface
V:40 [PRO] 0:91 [G] a:42 [GLU] 7:78 [G] ❌ 1VQ8_V:40 no longer at interface
V:40 [PRO] 0:90 [A] a:42 [GLU] 7:77 [A] ❌ 1VQ8_V:40 no longer at interface
V:45 [ARG] 0:91 [G] a:47 [ARG] 7:78 [G] ❌ 1VQ8_V:45 no longer at interface
V:45 [ARG] 0:92 [G] a:47 [ARG] 7:79 [A] ❌ 1VQ8_V:45 no longer at interface
V:61 [GLY] 0:68 [U] a:63 [ASN] 7:60 [U] ❌ 1VQ8_V:61 no longer at interface
V:61 [GLY] 0:106 [A] a:63 [ASN] 7:96 [A] ❌ 1VQ8_V:61 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L29 (L29p) 0.61 1.37 0.33 0.86 0.66 0.75 0.86 0.59 0.52 0.21 0.62


Other pairs involving 1VQ8_V_0 or 6AZ3_a_7

Total number of entries: 13

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_V_0 1YHQ_V_0 0.99 1.0 0.27 0.9 Ribosomal protein L29 (L29p) Archaeal large subunit ribosomal RNA compare
1VQ8_V_0 7K00_x_a 0.69 0.91 2.39 0.39 Ribosomal protein L29 (L29p) compare
1VQ8_V_0 6AZ3_a_7 0.59 0.61 1.37 0.33 Ribosomal protein L29 (L29p) compare
1VQ8_V_0 4Y4O_12_1A 0.61 0.93 2.21 0.25 Ribosomal protein L29 (L29p) compare
1VQ8_V_0 7RYG_X_A 0.42 0.92 3.91 0.41 Ribosomal protein L29 (L29p) compare
1VQ8_V_0 7O7Y_Bh_B8 0.59 0.63 2.19 0.33 Ribosomal protein L29 (L29p) compare
1VQ8_V_0 6S0Z_W_A 0.70 0.93 2.86 0.53 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 6AZ3_a_7 0.59 0.61 1.93 0.38 Ribosomal protein L29 (L29p) compare
4Y4O_12_1A 6AZ3_a_7 0.68 0.65 2.63 0.35 Ribosomal protein L29 (L29p) compare
6AZ3_a_7 6S0Z_W_A 0.69 0.68 1.53 0.4 Ribosomal protein L29 (L29p) compare
6AZ3_a_7 7RYG_X_A 0.67 0.63 1.87 0.31 Ribosomal protein L29 (L29p) compare
6AZ3_a_7 7O7Y_Bh_B8 0.82 0.94 0.94 0.5 Ribosomal protein L29 (L29p) 5.8S ribosomal RNA compare
6AZ3_a_7 7K00_x_a 0.64 0.66 1.39 0.35 Ribosomal protein L29 (L29p) compare