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All interfaces > All interologs > Interface groups > group117 > 1VQ8_V_0 vs 7RYG_X_A

Interface analysis


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Common contacts -

1VQ8_V
1VQ8_0
7RYG_X
7RYG_A
Conserved?
V:54 [ALA] 0:68 [U] X:51 [ALA] A:79 [A] ✔
V:54 [ALA] 0:69 [A] X:51 [ALA] A:80 [A] ✔
V:54 [ALA] 0:72 [C] X:51 [ALA] A:83 [C] ✔
V:57 [LYS] 0:68 [U] X:54 [LYS] A:79 [A] ✔
V:55 [ARG] 0:72 [C] X:52 [ARG] A:83 [C] ✔
V:55 [ARG] 0:73 [C] X:52 [ARG] A:84 [U] ✔
V:9 [ARG] 0:73 [C] X:7 [ARG] A:84 [U] ✔
V:9 [ARG] 0:74 [A] X:7 [ARG] A:85 [C] ✔
V:62 [GLU] 0:73 [C] X:59 [GLU] A:84 [U] ✔
V:53 [ILE] 0:68 [U] X:50 [ILE] A:79 [A] ✔
V:5 [VAL] 0:73 [C] X:3 [THR] A:84 [U] ✔
V:5 [VAL] 0:74 [A] X:3 [THR] A:85 [C] ✔
V:51 [LYS] 0:69 [A] X:47 [ARG] A:80 [A] ✔
V:58 [THR] 0:68 [U] X:55 [THR] A:79 [A] ✔
V:58 [THR] 0:72 [C] X:55 [THR] A:83 [C] ✔
V:58 [THR] 0:73 [C] X:55 [THR] A:84 [U] ✔
V:58 [THR] 0:105 [G] X:55 [THR] A:117 [G] ✔
V:43 [PRO] 0:91 [G] X:40 [SER] A:103 [U] ✔
V:42 [ASN] 0:91 [G] X:39 [LYS] A:103 [U] ✔
V:48 [GLU] 0:92 [G] X:44 [GLN] A:104 [C] ❌ 7RYG_X_A
V:48 [GLU] 0:93 [C] X:44 [GLN] A:105 [C] ❌ 7RYG_X_A
V:41 [GLU] 0:57 [C] X:38 [GLY] A:68 [A] ❌ 7RYG_X_A
V:51 [LYS] 0:71 [G] X:47 [ARG] A:82 [G] ❌ 7RYG_X_A
V:51 [LYS] 0:72 [C] X:47 [ARG] A:83 [C] ❌ 7RYG_X_A
V:58 [THR] 0:106 [A] X:55 [THR] A:118 [A] ❌ 7RYG_X_A
V:43 [PRO] 0:57 [C] X:40 [SER] A:68 [A] ❌ 7RYG_X_A
V:41 [GLU] 0:91 [G] X:38 [GLY] A:103 [U] ❌ 1VQ8_V_0
V:42 [ASN] 0:92 [G] X:39 [LYS] A:104 [C] ❌ 1VQ8_V_0
V:48 [GLU] 0:57 [C] X:44 [GLN] A:68 [A] ❌ 1VQ8_V_0
V:51 [LYS] 0:55 [U] X:47 [ARG] A:66 [U] ❌ 1VQ8_V_0
V:51 [LYS] 0:70 [A] X:47 [ARG] A:81 [A] ❌ 1VQ8_V_0
V:51 [LYS] 0:56 [G] X:47 [ARG] A:67 [G] ❌ 1VQ8_V_0
V:6 [GLN] 0:96 [A] X:4 [LYS] A:108 [U] ❌ 7RYG_X:4, 7RYG_A:108 no longer at interface
V:7 [GLU] 0:96 [A] X:5 [ASP] A:108 [U] ❌ 7RYG_X:5, 7RYG_A:108 no longer at interface
V:47 [LYS] 0:83 [C] X:43 [VAL] A:94 [C] ❌ 7RYG_X:43, 7RYG_A:94 no longer at interface
V:4 [HIS] 0:94 [G] X:2 [LYS] A:106 [U] ❌ 7RYG_X:2, 7RYG_A:106 no longer at interface
V:4 [HIS] 0:95 [A] X:2 [LYS] A:107 [U] ❌ 7RYG_X:2, 7RYG_A:107 no longer at interface
V:4 [HIS] 0:96 [A] X:2 [LYS] A:108 [U] ❌ 7RYG_X:2, 7RYG_A:108 no longer at interface
V:43 [PRO] 0:90 [A] X:40 [SER] A:102 [A] ❌ 7RYG_A:102 no longer at interface
V:61 [GLY] 0:107 [U] X:58 [THR] A:119 [U] ❌ 1VQ8_V:61, 1VQ8_0:107 no longer at interface
V:50 [ARG] 0:55 [U] X:46 [ALA] A:66 [U] ❌ 7RYG_X:46 no longer at interface
V:50 [ARG] 0:56 [G] X:46 [ALA] A:67 [G] ❌ 7RYG_X:46 no longer at interface
V:50 [ARG] 0:57 [C] X:46 [ALA] A:68 [A] ❌ 7RYG_X:46 no longer at interface
V:50 [ARG] 0:68 [U] X:46 [ALA] A:79 [A] ❌ 7RYG_X:46 no longer at interface
V:50 [ARG] 0:69 [A] X:46 [ALA] A:80 [A] ❌ 7RYG_X:46 no longer at interface
V:50 [ARG] 0:70 [A] X:46 [ALA] A:81 [A] ❌ 7RYG_X:46 no longer at interface
V:59 [ILE] 0:73 [C] X:56 [LEU] A:84 [U] ❌ 7RYG_X:56 no longer at interface
V:47 [LYS] 0:57 [C] X:43 [VAL] A:68 [A] ❌ 7RYG_X:43 no longer at interface
V:46 [ILE] 0:57 [C] X:42 [GLU] A:68 [A] ❌ 7RYG_X:42 no longer at interface
V:32 [ALA] 0:57 [C] X:32 [LYS] A:68 [A] ❌ 1VQ8_V:32 no longer at interface
V:45 [ARG] 0:93 [C] X:41 [HIS] A:105 [C] ❌ 1VQ8_V:45 no longer at interface
V:45 [ARG] 0:92 [G] X:41 [HIS] A:104 [C] ❌ 1VQ8_V:45 no longer at interface
V:52 [ALA] 0:69 [A] X:48 [LYS] A:80 [A] ❌ 1VQ8_V:52 no longer at interface
V:52 [ALA] 0:72 [C] X:48 [LYS] A:83 [C] ❌ 1VQ8_V:52 no longer at interface
V:52 [ALA] 0:71 [G] X:48 [LYS] A:82 [G] ❌ 1VQ8_V:52 no longer at interface
V:61 [GLY] 0:68 [U] X:58 [THR] A:79 [A] ❌ 1VQ8_V:61 no longer at interface
V:61 [GLY] 0:106 [A] X:58 [THR] A:118 [A] ❌ 1VQ8_V:61 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L29 (L29p) 0.92 3.91 0.41 0.91 0.92 0.76 0.94 0.42 0.41 0.36 0.66


Other pairs involving 1VQ8_V_0 or 7RYG_X_A

Total number of entries: 12

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_V_0 7RYG_X_A 0.46 0.92 3.85 0.41 Ribosomal protein L29 (L29p) compare
6S0Z_W_A 7RYG_X_A 0.86 0.98 2.21 0.53 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare
6AZ3_a_7 7RYG_X_A 0.67 0.63 1.87 0.31 Ribosomal protein L29 (L29p) compare
7O7Y_Bh_B8 7RYG_X_A 0.60 0.65 2.11 0.12 Ribosomal protein L29 (L29p) compare
4Y4O_12_1A 7RYG_X_A 0.59 0.96 3.18 0.35 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare
1VQ8_V_0 1YHQ_V_0 0.99 1.0 0.27 0.9 Ribosomal protein L29 (L29p) Archaeal large subunit ribosomal RNA compare
1VQ8_V_0 7K00_x_a 0.69 0.91 2.39 0.39 Ribosomal protein L29 (L29p) compare
1VQ8_V_0 6AZ3_a_7 0.59 0.61 1.37 0.33 Ribosomal protein L29 (L29p) compare
1VQ8_V_0 4Y4O_12_1A 0.61 0.93 2.21 0.25 Ribosomal protein L29 (L29p) compare
1VQ8_V_0 7RYG_X_A 0.42 0.92 3.91 0.41 Ribosomal protein L29 (L29p) compare
1VQ8_V_0 7O7Y_Bh_B8 0.59 0.63 2.19 0.33 Ribosomal protein L29 (L29p) compare
1VQ8_V_0 6S0Z_W_A 0.70 0.93 2.86 0.53 Ribosomal protein L29 (L29p) compare