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All interfaces > All interologs > Interface groups > group117 > 1YHQ_V_0 vs 4Y4O_12_1A

Interface analysis


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Common contacts -

1YHQ_V
1YHQ_0
4Y4O_12
4Y4O_1A
Conserved?
V:50 [ARG] 0:56 [G] 12:54 [LYS] 1A:59 [G] ✔
V:50 [ARG] 0:57 [C] 12:54 [LYS] 1A:60 [G] ✔
V:50 [ARG] 0:68 [U] 12:54 [LYS] 1A:71 [U] ✔
V:50 [ARG] 0:69 [A] 12:54 [LYS] 1A:72 [A] ✔
V:50 [ARG] 0:70 [A] 12:54 [LYS] 1A:73 [A] ✔
V:54 [ALA] 0:68 [U] 12:58 [ALA] 1A:71 [U] ✔
V:54 [ALA] 0:69 [A] 12:58 [ALA] 1A:72 [A] ✔
V:54 [ALA] 0:72 [C] 12:58 [ALA] 1A:75 [C] ✔
V:2 [VAL] 0:93 [C] 12:2 [LYS] 1A:96 [C] ✔
V:57 [LYS] 0:68 [U] 12:61 [LEU] 1A:71 [U] ✔
V:44 [GLY] 0:91 [G] 12:48 [HIS] 1A:94 [G] ✔
V:44 [GLY] 0:92 [G] 12:48 [HIS] 1A:95 [G] ✔
V:55 [ARG] 0:72 [C] 12:59 [ARG] 1A:75 [C] ✔
V:55 [ARG] 0:73 [U] 12:59 [ARG] 1A:76 [C] ✔
V:48 [GLU] 0:92 [G] 12:52 [ASP] 1A:95 [G] ✔
V:34 [GLN] 0:57 [C] 12:39 [ALA] 1A:60 [G] ✔
V:47 [LYS] 0:57 [C] 12:51 [ARG] 1A:60 [G] ✔
V:47 [LYS] 0:83 [C] 12:51 [ARG] 1A:86 [C] ✔
V:62 [GLU] 0:73 [U] 12:66 [GLU] 1A:76 [C] ✔
V:53 [ILE] 0:68 [U] 12:57 [ILE] 1A:71 [U] ✔
V:1 [THR] 0:92 [G] 12:1 [MET] 1A:95 [G] ✔
V:1 [THR] 0:93 [C] 12:1 [MET] 1A:96 [C] ✔
V:1 [THR] 0:94 [G] 12:1 [MET] 1A:97 [G] ✔
V:51 [LYS] 0:69 [A] 12:55 [ARG] 1A:72 [A] ✔
V:51 [LYS] 0:71 [G] 12:55 [ARG] 1A:74 [G] ✔
V:51 [LYS] 0:72 [C] 12:55 [ARG] 1A:75 [C] ✔
V:58 [THR] 0:68 [U] 12:62 [THR] 1A:71 [U] ✔
V:58 [THR] 0:72 [C] 12:62 [THR] 1A:75 [C] ✔
V:58 [THR] 0:73 [U] 12:62 [THR] 1A:76 [C] ✔
V:58 [THR] 0:105 [G] 12:62 [THR] 1A:108 [G] ✔
V:58 [THR] 0:106 [A] 12:62 [THR] 1A:109 [A] ✔
V:43 [PRO] 0:57 [C] 12:47 [ASN] 1A:60 [G] ✔
V:43 [PRO] 0:90 [A] 12:47 [ASN] 1A:93 [G] ✔
V:43 [PRO] 0:91 [G] 12:47 [ASN] 1A:94 [G] ✔
V:42 [ASN] 0:91 [G] 12:46 [GLN] 1A:94 [G] ✔
V:42 [ASN] 0:92 [G] 12:46 [GLN] 1A:95 [G] ✔
V:46 [ILE] 0:57 [C] 12:50 [ILE] 1A:60 [G] ✔
V:2 [VAL] 0:96 [A] 12:2 [LYS] 1A:99 [G] ❌ 4Y4O_12_1A
V:48 [GLU] 0:93 [C] 12:52 [ASP] 1A:96 [C] ❌ 4Y4O_12_1A
V:41 [GLU] 0:57 [C] 12:45 [SER] 1A:60 [G] ❌ 4Y4O_12_1A
V:4 [HIS] 0:94 [G] 12:6 [VAL] 1A:97 [G] ❌ 4Y4O_12_1A
V:4 [HIS] 0:95 [A] 12:6 [VAL] 1A:98 [U] ❌ 4Y4O_12_1A
V:4 [HIS] 0:96 [A] 12:6 [VAL] 1A:99 [G] ❌ 4Y4O_12_1A
V:5 [VAL] 0:73 [U] 12:7 [ARG] 1A:76 [C] ❌ 4Y4O_12_1A
V:5 [VAL] 0:74 [G] 12:7 [ARG] 1A:77 [A] ❌ 4Y4O_12_1A
V:2 [VAL] 0:94 [G] 12:2 [LYS] 1A:97 [G] ❌ 1YHQ_V_0
V:41 [GLU] 0:91 [G] 12:45 [SER] 1A:94 [G] ❌ 1YHQ_V_0
V:41 [GLU] 0:90 [A] 12:45 [SER] 1A:93 [G] ❌ 1YHQ_V_0
V:42 [ASN] 0:90 [A] 12:46 [GLN] 1A:93 [G] ❌ 1YHQ_V_0
V:47 [LYS] 0:56 [G] 12:51 [ARG] 1A:59 [G] ❌ 1YHQ_V_0
V:51 [LYS] 0:70 [A] 12:55 [ARG] 1A:73 [A] ❌ 1YHQ_V_0
V:4 [HIS] 0:73 [U] 12:6 [VAL] 1A:76 [C] ❌ 1YHQ_V_0
V:5 [VAL] 0:96 [A] 12:7 [ARG] 1A:99 [G] ❌ 1YHQ_V_0
V:50 [ARG] 0:55 [U] 12:54 [LYS] 1A:58 [U] ❌ 4Y4O_1A:58 no longer at interface
V:34 [GLN] 0:58 [C] 12:39 [ALA] 1A:61 [C] ❌ 4Y4O_1A:61 no longer at interface
V:24 [LYS] 0:67 [A] 12:29 [LYS] 1A:70 [A] ❌ 1YHQ_V:24, 1YHQ_0:67 no longer at interface
V:61 [GLY] 0:107 [U] 12:65 [ASN] 1A:110 [U] ❌ 1YHQ_V:61, 1YHQ_0:107 no longer at interface
V:5 [VAL] 0:97 [G] 12:7 [ARG] 1A:100 [G] ❌ 1YHQ_0:97 no longer at interface
V:6 [GLN] 0:96 [A] 12:8 [LYS] 1A:99 [G] ❌ 4Y4O_12:8 no longer at interface
V:7 [GLU] 0:96 [A] 12:9 [GLN] 1A:99 [G] ❌ 4Y4O_12:9 no longer at interface
V:59 [ILE] 0:73 [U] 12:63 [VAL] 1A:76 [C] ❌ 4Y4O_12:63 no longer at interface
V:9 [ARG] 0:73 [U] 12:11 [GLU] 1A:76 [C] ❌ 4Y4O_12:11 no longer at interface
V:9 [ARG] 0:74 [G] 12:11 [GLU] 1A:77 [A] ❌ 4Y4O_12:11 no longer at interface
V:8 [ILE] 0:73 [U] 12:10 [LEU] 1A:76 [C] ❌ 1YHQ_V:8 no longer at interface
V:8 [ILE] 0:74 [G] 12:10 [LEU] 1A:77 [A] ❌ 1YHQ_V:8 no longer at interface
V:24 [LYS] 0:68 [U] 12:29 [LYS] 1A:71 [U] ❌ 1YHQ_V:24 no longer at interface
V:40 [PRO] 0:90 [A] 12:44 [LEU] 1A:93 [G] ❌ 1YHQ_V:40 no longer at interface
V:61 [GLY] 0:68 [U] 12:65 [ASN] 1A:71 [U] ❌ 1YHQ_V:61 no longer at interface
V:61 [GLY] 0:106 [A] 12:65 [ASN] 1A:109 [A] ❌ 1YHQ_V:61 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L29 (L29p) 0.93 2.13 0.25 0.84 0.93 0.83 0.9 0.63 0.60 0.25 0.50


Other pairs involving 1YHQ_V_0 or 4Y4O_12_1A

Total number of entries: 13

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_V_0 6AZ3_a_7 0.59 0.61 1.93 0.38 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 4Y4O_12_1A 0.63 0.93 2.13 0.25 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 7K00_x_a 0.71 0.91 2.22 0.39 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 7RYG_X_A 0.46 0.92 3.85 0.41 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 6S0Z_W_A 0.71 0.93 2.68 0.58 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 7O7Y_Bh_B8 0.59 0.63 2.24 0.29 Ribosomal protein L29 (L29p) compare
4Y4O_12_1A 6AZ3_a_7 0.68 0.65 2.63 0.35 Ribosomal protein L29 (L29p) compare
4Y4O_12_1A 7RYG_X_A 0.59 0.96 3.18 0.35 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare
4Y4O_12_1A 7O7Y_Bh_B8 0.60 0.67 2.56 0.29 Ribosomal protein L29 (L29p) compare
4Y4O_12_1A 6S0Z_W_A 0.88 0.96 2.09 0.42 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare
4Y4O_12_1A 7K00_x_a 0.87 0.96 0.91 0.39 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare
1VQ8_V_0 1YHQ_V_0 0.99 1.0 0.27 0.9 Ribosomal protein L29 (L29p) Archaeal large subunit ribosomal RNA compare
1VQ8_V_0 4Y4O_12_1A 0.61 0.93 2.21 0.25 Ribosomal protein L29 (L29p) compare