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All interfaces > All interologs > Interface groups > group117 > 1YHQ_V_0 vs 6S0Z_W_A

Interface analysis


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Common contacts -

1YHQ_V
1YHQ_0
6S0Z_W
6S0Z_A
Conserved?
V:50 [ARG] 0:55 [U] W:47 [ARG] A:59 [U] ✔
V:50 [ARG] 0:56 [G] W:47 [ARG] A:60 [U] ✔
V:50 [ARG] 0:57 [C] W:47 [ARG] A:61 [A] ✔
V:50 [ARG] 0:68 [U] W:47 [ARG] A:72 [U] ✔
V:50 [ARG] 0:69 [A] W:47 [ARG] A:73 [A] ✔
V:50 [ARG] 0:70 [A] W:47 [ARG] A:74 [U] ✔
V:54 [ALA] 0:68 [U] W:51 [ALA] A:72 [U] ✔
V:54 [ALA] 0:69 [A] W:51 [ALA] A:73 [A] ✔
V:54 [ALA] 0:72 [C] W:51 [ALA] A:76 [C] ✔
V:57 [LYS] 0:68 [U] W:54 [LYS] A:72 [U] ✔
V:44 [GLY] 0:91 [G] W:41 [ALA] A:95 [A] ✔
V:44 [GLY] 0:92 [G] W:41 [ALA] A:96 [G] ✔
V:55 [ARG] 0:72 [C] W:52 [ARG] A:76 [C] ✔
V:55 [ARG] 0:73 [U] W:52 [ARG] A:77 [U] ✔
V:9 [ARG] 0:73 [U] W:7 [ARG] A:77 [U] ✔
V:9 [ARG] 0:74 [G] W:7 [ARG] A:78 [U] ✔
V:34 [GLN] 0:57 [C] W:32 [LEU] A:61 [A] ✔
V:47 [LYS] 0:57 [C] W:44 [ARG] A:61 [A] ✔
V:62 [GLU] 0:73 [U] W:59 [GLU] A:77 [U] ✔
V:53 [ILE] 0:68 [U] W:50 [ILE] A:72 [U] ✔
V:5 [VAL] 0:73 [U] W:3 [ALA] A:77 [U] ✔
V:5 [VAL] 0:74 [G] W:3 [ALA] A:78 [U] ✔
V:51 [LYS] 0:69 [A] W:48 [LYS] A:73 [A] ✔
V:51 [LYS] 0:71 [G] W:48 [LYS] A:75 [G] ✔
V:51 [LYS] 0:72 [C] W:48 [LYS] A:76 [C] ✔
V:58 [THR] 0:68 [U] W:55 [THR] A:72 [U] ✔
V:58 [THR] 0:72 [C] W:55 [THR] A:76 [C] ✔
V:58 [THR] 0:73 [U] W:55 [THR] A:77 [U] ✔
V:58 [THR] 0:106 [A] W:55 [THR] A:110 [A] ✔
V:43 [PRO] 0:57 [C] W:40 [THR] A:61 [A] ✔
V:43 [PRO] 0:90 [A] W:40 [THR] A:94 [A] ✔
V:43 [PRO] 0:91 [G] W:40 [THR] A:95 [A] ✔
V:42 [ASN] 0:91 [G] W:39 [GLU] A:95 [A] ✔
V:42 [ASN] 0:92 [G] W:39 [GLU] A:96 [G] ✔
V:46 [ILE] 0:57 [C] W:43 [ILE] A:61 [A] ✔
V:41 [GLU] 0:57 [C] W:38 [GLU] A:61 [A] ❌ 6S0Z_W_A
V:41 [GLU] 0:90 [A] W:38 [GLU] A:94 [A] ❌ 1YHQ_V_0
V:41 [GLU] 0:91 [G] W:38 [GLU] A:95 [A] ❌ 1YHQ_V_0
V:47 [LYS] 0:70 [A] W:44 [ARG] A:74 [U] ❌ 1YHQ_V_0
V:47 [LYS] 0:72 [C] W:44 [ARG] A:76 [C] ❌ 1YHQ_V_0
V:47 [LYS] 0:71 [G] W:44 [ARG] A:75 [G] ❌ 1YHQ_V_0
V:51 [LYS] 0:70 [A] W:48 [LYS] A:74 [U] ❌ 1YHQ_V_0
V:6 [GLN] 0:96 [A] W:4 [LYS] A:100 [U] ❌ 6S0Z_W:4, 6S0Z_A:100 no longer at interface
V:7 [GLU] 0:96 [A] W:5 [GLU] A:100 [U] ❌ 6S0Z_W:5, 6S0Z_A:100 no longer at interface
V:48 [GLU] 0:93 [C] W:45 [THR] A:97 [C] ❌ 6S0Z_W:45, 6S0Z_A:97 no longer at interface
V:34 [GLN] 0:58 [C] W:32 [LEU] A:62 [C] ❌ 6S0Z_A:62 no longer at interface
V:47 [LYS] 0:83 [C] W:44 [ARG] A:87 [U] ❌ 6S0Z_A:87 no longer at interface
V:4 [HIS] 0:94 [G] W:2 [LYS] A:98 [U] ❌ 6S0Z_W:2, 6S0Z_A:98 no longer at interface
V:4 [HIS] 0:95 [A] W:2 [LYS] A:99 [U] ❌ 6S0Z_W:2, 6S0Z_A:99 no longer at interface
V:4 [HIS] 0:96 [A] W:2 [LYS] A:100 [U] ❌ 6S0Z_W:2, 6S0Z_A:100 no longer at interface
V:58 [THR] 0:105 [G] W:55 [THR] A:109 [G] ❌ 6S0Z_A:109 no longer at interface
V:61 [GLY] 0:107 [U] W:58 [ARG] A:111 [U] ❌ 1YHQ_V:61, 1YHQ_0:107 no longer at interface
V:48 [GLU] 0:92 [G] W:45 [THR] A:96 [G] ❌ 6S0Z_W:45 no longer at interface
V:59 [ILE] 0:73 [U] W:56 [VAL] A:77 [U] ❌ 6S0Z_W:56 no longer at interface
V:31 [ARG] 0:56 [G] W:29 [ARG] A:60 [U] ❌ 1YHQ_V:31 no longer at interface
V:61 [GLY] 0:106 [A] W:58 [ARG] A:110 [A] ❌ 1YHQ_V:61 no longer at interface
V:61 [GLY] 0:68 [U] W:58 [ARG] A:72 [U] ❌ 1YHQ_V:61 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L29 (L29p) 0.93 2.68 0.58 0.85 0.93 0.89 0.93 0.71 0.58 0.39 0.68


Other pairs involving 1YHQ_V_0 or 6S0Z_W_A

Total number of entries: 13

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_V_0 1YHQ_V_0 0.99 1.0 0.27 0.9 Ribosomal protein L29 (L29p) Archaeal large subunit ribosomal RNA compare
1YHQ_V_0 4Y4O_12_1A 0.63 0.93 2.13 0.25 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 6AZ3_a_7 0.59 0.61 1.93 0.38 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 6S0Z_W_A 0.71 0.93 2.68 0.58 Ribosomal protein L29 (L29p) compare
6AZ3_a_7 6S0Z_W_A 0.69 0.68 1.53 0.4 Ribosomal protein L29 (L29p) compare
4Y4O_12_1A 6S0Z_W_A 0.88 0.96 2.09 0.42 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare
1VQ8_V_0 6S0Z_W_A 0.70 0.93 2.86 0.53 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 7K00_x_a 0.71 0.91 2.22 0.39 Ribosomal protein L29 (L29p) compare
6S0Z_W_A 7K00_x_a 0.86 0.97 1.52 0.42 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare
1YHQ_V_0 7O7Y_Bh_B8 0.59 0.63 2.24 0.29 Ribosomal protein L29 (L29p) compare
6S0Z_W_A 7O7Y_Bh_B8 0.63 0.7 1.77 0.2 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 7RYG_X_A 0.46 0.92 3.85 0.41 Ribosomal protein L29 (L29p) compare
6S0Z_W_A 7RYG_X_A 0.86 0.98 2.21 0.53 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare