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All interfaces > All interologs > Interface groups > group117 > 1YHQ_V_0 vs 7K00_x_a

Interface analysis


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Common contacts -

1YHQ_V
1YHQ_0
7K00_x
7K00_a
Conserved?
V:50 [ARG] 0:56 [G] x:47 [ARG] a:60 [G] ✔
V:50 [ARG] 0:57 [C] x:47 [ARG] a:61 [C] ✔
V:50 [ARG] 0:69 [A] x:47 [ARG] a:73 [A] ✔
V:50 [ARG] 0:70 [A] x:47 [ARG] a:74 [A] ✔
V:54 [ALA] 0:68 [U] x:51 [ALA] a:72 [U] ✔
V:54 [ALA] 0:69 [A] x:51 [ALA] a:73 [A] ✔
V:54 [ALA] 0:72 [C] x:51 [ALA] a:76 [C] ✔
V:57 [LYS] 0:68 [U] x:54 [LYS] a:72 [U] ✔
V:44 [GLY] 0:91 [G] x:41 [HIS] a:95 [A] ✔
V:44 [GLY] 0:92 [G] x:41 [HIS] a:96 [C] ✔
V:55 [ARG] 0:72 [C] x:52 [ARG] a:76 [C] ✔
V:55 [ARG] 0:73 [U] x:52 [ARG] a:77 [G] ✔
V:48 [GLU] 0:92 [G] x:45 [GLN] a:96 [C] ✔
V:48 [GLU] 0:93 [C] x:45 [GLN] a:97 [C] ✔
V:9 [ARG] 0:73 [U] x:7 [ARG] a:77 [G] ✔
V:9 [ARG] 0:74 [G] x:7 [ARG] a:78 [U] ✔
V:47 [LYS] 0:57 [C] x:44 [LYS] a:61 [C] ✔
V:47 [LYS] 0:83 [C] x:44 [LYS] a:87 [U] ✔
V:62 [GLU] 0:73 [U] x:59 [GLU] a:77 [G] ✔
V:53 [ILE] 0:68 [U] x:50 [VAL] a:72 [U] ✔
V:5 [VAL] 0:73 [U] x:3 [ALA] a:77 [G] ✔
V:5 [VAL] 0:74 [G] x:3 [ALA] a:78 [U] ✔
V:51 [LYS] 0:69 [A] x:48 [ARG] a:73 [A] ✔
V:51 [LYS] 0:71 [G] x:48 [ARG] a:75 [G] ✔
V:51 [LYS] 0:72 [C] x:48 [ARG] a:76 [C] ✔
V:58 [THR] 0:68 [U] x:55 [THR] a:72 [U] ✔
V:58 [THR] 0:72 [C] x:55 [THR] a:76 [C] ✔
V:58 [THR] 0:73 [U] x:55 [THR] a:77 [G] ✔
V:58 [THR] 0:105 [G] x:55 [THR] a:110 [G] ✔
V:58 [THR] 0:106 [A] x:55 [THR] a:111 [A] ✔
V:43 [PRO] 0:57 [C] x:40 [SER] a:61 [C] ✔
V:43 [PRO] 0:90 [A] x:40 [SER] a:94 [A] ✔
V:43 [PRO] 0:91 [G] x:40 [SER] a:95 [A] ✔
V:42 [ASN] 0:91 [G] x:39 [GLN] a:95 [A] ✔
V:42 [ASN] 0:92 [G] x:39 [GLN] a:96 [C] ✔
V:46 [ILE] 0:57 [C] x:43 [LEU] a:61 [C] ✔
V:50 [ARG] 0:68 [U] x:47 [ARG] a:72 [U] ❌ 7K00_x_a
V:41 [GLU] 0:57 [C] x:38 [GLN] a:61 [C] ❌ 7K00_x_a
V:41 [GLU] 0:91 [G] x:38 [GLN] a:95 [A] ❌ 1YHQ_V_0
V:41 [GLU] 0:90 [A] x:38 [GLN] a:94 [A] ❌ 1YHQ_V_0
V:6 [GLN] 0:74 [G] x:4 [LYS] a:78 [U] ❌ 1YHQ_V_0
V:51 [LYS] 0:70 [A] x:48 [ARG] a:74 [A] ❌ 1YHQ_V_0
V:50 [ARG] 0:55 [U] x:47 [ARG] a:59 [U] ❌ 7K00_a:59 no longer at interface
V:6 [GLN] 0:96 [A] x:4 [LYS] a:101 [A] ❌ 7K00_a:101 no longer at interface
V:7 [GLU] 0:96 [A] x:5 [GLU] a:101 [A] ❌ 7K00_a:101 no longer at interface
V:34 [GLN] 0:58 [C] x:32 [ALA] a:62 [U] ❌ 7K00_x:32, 7K00_a:62 no longer at interface
V:4 [HIS] 0:94 [G] x:2 [LYS] a:98 [G] ❌ 7K00_a:98 no longer at interface
V:4 [HIS] 0:95 [A] x:2 [LYS] a:99 [U] ❌ 7K00_a:99 no longer at interface
V:4 [HIS] 0:96 [A] x:2 [LYS] a:101 [A] ❌ 7K00_a:101 no longer at interface
V:4 [HIS] 0:97 [G] x:2 [LYS] a:102 [U] ❌ 1YHQ_0:97 no longer at interface
V:5 [VAL] 0:97 [G] x:3 [ALA] a:102 [U] ❌ 1YHQ_0:97 no longer at interface
V:6 [GLN] 0:97 [G] x:4 [LYS] a:102 [U] ❌ 1YHQ_0:97 no longer at interface
V:7 [GLU] 0:97 [G] x:5 [GLU] a:102 [U] ❌ 1YHQ_0:97 no longer at interface
V:61 [GLY] 0:107 [U] x:58 [ASN] a:112 [U] ❌ 1YHQ_V:61, 1YHQ_0:107 no longer at interface
V:59 [ILE] 0:73 [U] x:56 [LEU] a:77 [G] ❌ 7K00_x:56 no longer at interface
V:34 [GLN] 0:57 [C] x:32 [ALA] a:61 [C] ❌ 7K00_x:32 no longer at interface
V:45 [ARG] 0:91 [G] x:42 [LEU] a:95 [A] ❌ 1YHQ_V:45 no longer at interface
V:61 [GLY] 0:68 [U] x:58 [ASN] a:72 [U] ❌ 1YHQ_V:61 no longer at interface
V:61 [GLY] 0:106 [A] x:58 [ASN] a:111 [A] ❌ 1YHQ_V:61 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L29 (L29p) 0.91 2.22 0.39 0.88 0.9 0.87 0.89 0.71 0.63 0.35 0.74


Other pairs involving 1YHQ_V_0 or 7K00_x_a

Total number of entries: 11

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_V_0 1YHQ_V_0 0.99 1.0 0.27 0.9 Ribosomal protein L29 (L29p) Archaeal large subunit ribosomal RNA compare
1VQ8_V_0 7K00_x_a 0.69 0.91 2.39 0.39 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 6AZ3_a_7 0.59 0.61 1.93 0.38 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 4Y4O_12_1A 0.63 0.93 2.13 0.25 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 7K00_x_a 0.71 0.91 2.22 0.39 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 7RYG_X_A 0.46 0.92 3.85 0.41 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 6S0Z_W_A 0.71 0.93 2.68 0.58 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 7O7Y_Bh_B8 0.59 0.63 2.24 0.29 Ribosomal protein L29 (L29p) compare
4Y4O_12_1A 7K00_x_a 0.87 0.96 0.91 0.39 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare
6AZ3_a_7 7K00_x_a 0.64 0.66 1.39 0.35 Ribosomal protein L29 (L29p) compare
6S0Z_W_A 7K00_x_a 0.86 0.97 1.52 0.42 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare