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All interfaces > All interologs > Interface groups > group117 > 4Y4O_12_1A

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Licorice
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RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4Y4O_12
4Y4O_1A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
12:1 [MET] 1A:95 [G] 4.59 1A:85 [C] 42.72
12:1 [MET] 1A:96 [C] 3.57 1A:84 [G] 42.72
12:1 [MET] 1A:97 [G] 4.8 42.72
12:2 [LYS] 1A:96 [C] 3.1 1A:84 [G] 59.77
12:2 [LYS] 1A:97 [G] 3.28 59.77
12:3 [LEU] 1A:96 [C] 3.86 1A:84 [G] 66.19
12:3 [LEU] 1A:97 [G] 2.81 66.19
12:3 [LEU] 1A:98 [U] 4.84 66.19
12:3 [LEU] 1A:100 [G] 3.78 1A:83 [A] 66.19
12:3 [LEU] 1A:101 [A] 3.82 1A:82 [G] 66.19
12:4 [SER] 1A:97 [G] 4.51 22.16
12:4 [SER] 1A:99 [G] 4.03 22.16
12:6 [VAL] 1A:76 [C] 4.06 1A:107 [G] 47.99
12:7 [ARG] 1A:99 [G] 3.14 base:SC 28.26
12:7 [ARG] 1A:100 [G] 2.88 1A:83 [A] 28.26
12:10 [LEU] 1A:76 [C] 3.87 1A:107 [G] 26.17
12:10 [LEU] 1A:77 [A] 3.83 1A:106 [U] 26.17
12:14 [ARG] 1A:76 [C] 2.93 1A:107 [G] sugar:SC 77.76
12:14 [ARG] 1A:77 [A] 2.94 1A:106 [U] 77.76
12:29 [LYS] 1A:70 [A] 4.34 56.41
12:29 [LYS] 1A:71 [U] 2.58 56.41
12:39 [ALA] 1A:60 [G] 4.19 1A:92 [C] 19.55
12:44 [LEU] 1A:93 [G] 4.9 47.13
12:45 [SER] 1A:93 [G] 2.88 sugar:BB 57.11
12:45 [SER] 1A:94 [G] 3.24 1A:86 [C] 57.11
12:46 [GLN] 1A:93 [G] 4.98 69.97
12:46 [GLN] 1A:94 [G] 3.37 1A:86 [C] 69.97
12:46 [GLN] 1A:95 [G] 2.68 1A:85 [C] 69.97
12:47 [ASN] 1A:60 [G] 3.39 1A:92 [C] base/AA stacks 41.26
12:47 [ASN] 1A:93 [G] 2.93 base:SC, base:SC 41.26
12:47 [ASN] 1A:94 [G] 3.32 1A:86 [C] 41.26
12:48 [HIS] 1A:94 [G] 2.57 1A:86 [C] sugar:SC 61.2
12:48 [HIS] 1A:95 [G] 3.12 1A:85 [C] 61.2
12:50 [ILE] 1A:60 [G] 3.58 1A:92 [C] 69.34
12:51 [ARG] 1A:59 [G] 3.61 68.56
12:51 [ARG] 1A:60 [G] 2.9 1A:92 [C] 68.56
12:51 [ARG] 1A:86 [C] 3.29 1A:94 [G] sugar:SC 68.56
12:52 [ASP] 1A:95 [G] 4.85 1A:85 [C] 19.05
12:54 [LYS] 1A:59 [G] 4.59 83.01
12:54 [LYS] 1A:60 [G] 4.62 1A:92 [C] 83.01
12:54 [LYS] 1A:71 [U] 4.62 83.01
12:54 [LYS] 1A:72 [A] 3.54 83.01
12:54 [LYS] 1A:73 [A] 4.14 1A:66 [U] 83.01
12:55 [ARG] 1A:72 [A] 4.47 81.77
12:55 [ARG] 1A:73 [A] 3.83 1A:66 [U] 81.77
12:55 [ARG] 1A:74 [G] 3.43 1A:109 [A] 81.77
12:55 [ARG] 1A:75 [C] 3.94 1A:108 [G] 81.77
12:57 [ILE] 1A:71 [U] 4.41 89.11
12:58 [ALA] 1A:71 [U] 3.45 99.0
12:58 [ALA] 1A:72 [A] 4.31 99.0
12:58 [ALA] 1A:75 [C] 3.61 1A:108 [G] 99.0
12:59 [ARG] 1A:75 [C] 3.05 1A:108 [G] 89.07
12:59 [ARG] 1A:76 [C] 3.08 1A:107 [G] 89.07
12:61 [LEU] 1A:71 [U] 3.6 65.55
12:62 [THR] 1A:71 [U] 3.46 99.0
12:62 [THR] 1A:75 [C] 2.62 1A:108 [G] sugar:SC 99.0
12:62 [THR] 1A:76 [C] 3.52 1A:107 [G] 99.0
12:62 [THR] 1A:108 [G] 4.61 1A:75 [C] 99.0
12:62 [THR] 1A:109 [A] 4.79 1A:74 [G] 99.0
12:65 [ASN] 1A:71 [U] 3.95 64.17
12:65 [ASN] 1A:109 [A] 3.1 1A:74 [G] 64.17
12:65 [ASN] 1A:110 [U] 3.29 64.17
12:66 [GLU] 1A:76 [C] 3.23 1A:107 [G] sugar:SC 75.68
12:69 [ARG] 1A:108 [G] 3.88 1A:75 [C] 15.81
12:69 [ARG] 1A:109 [A] 3.7 1A:74 [G] 15.81

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group117 4Y4O_12_1A 12: 50s ribosomal protein l29, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1A: 23s ribosomal RNA, Thermus thermophilus hb8 (natural) Q5SHP6 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_12_1A 7RYG_X_A 0.59 0.96 3.18 0.35 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare
4Y4O_12_1A 7O7Y_Bh_B8 0.60 0.67 2.56 0.29 Ribosomal protein L29 (L29p) compare
1VQ8_V_0 4Y4O_12_1A 0.61 0.93 2.21 0.25 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 4Y4O_12_1A 0.63 0.93 2.13 0.25 Ribosomal protein L29 (L29p) compare
4Y4O_12_1A 6AZ3_a_7 0.68 0.65 2.63 0.35 Ribosomal protein L29 (L29p) compare
4Y4O_12_1A 7K00_x_a 0.87 0.96 0.91 0.39 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare
4Y4O_12_1A 6S0Z_W_A 0.88 0.96 2.09 0.42 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare