RNAprotDB

All interfaces > All interologs > Interface groups > group117 > 4Y4O_12_1A vs 6AZ3_a_7

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

4Y4O_12
4Y4O_1A
6AZ3_a
6AZ3_7
Conserved?
12:69 [ARG] 1A:108 [G] a:67 [ARG] 7:95 [A] ✔
12:69 [ARG] 1A:109 [A] a:67 [ARG] 7:96 [A] ✔
12:39 [ALA] 1A:60 [G] a:36 [GLN] 7:49 [G] ✔
12:58 [ALA] 1A:71 [U] a:56 [ALA] 7:60 [U] ✔
12:58 [ALA] 1A:72 [A] a:56 [ALA] 7:61 [A] ✔
12:58 [ALA] 1A:75 [C] a:56 [ALA] 7:64 [U] ✔
12:14 [ARG] 1A:76 [C] a:11 [ARG] 7:65 [G] ✔
12:14 [ARG] 1A:77 [A] a:11 [ARG] 7:66 [G] ✔
12:51 [ARG] 1A:59 [G] a:49 [ARG] 7:48 [A] ✔
12:51 [ARG] 1A:60 [G] a:49 [ARG] 7:49 [G] ✔
12:66 [GLU] 1A:76 [C] a:64 [GLN] 7:65 [G] ✔
12:55 [ARG] 1A:72 [A] a:53 [LYS] 7:61 [A] ✔
12:55 [ARG] 1A:73 [A] a:53 [LYS] 7:62 [A] ✔
12:55 [ARG] 1A:74 [G] a:53 [LYS] 7:63 [G] ✔
12:55 [ARG] 1A:75 [C] a:53 [LYS] 7:64 [U] ✔
12:61 [LEU] 1A:71 [U] a:59 [LEU] 7:60 [U] ✔
12:59 [ARG] 1A:75 [C] a:57 [ARG] 7:64 [U] ✔
12:59 [ARG] 1A:76 [C] a:57 [ARG] 7:65 [G] ✔
12:10 [LEU] 1A:76 [C] a:7 [ILE] 7:65 [G] ✔
12:10 [LEU] 1A:77 [A] a:7 [ILE] 7:66 [G] ✔
12:48 [HIS] 1A:94 [G] a:46 [GLY] 7:78 [G] ✔
12:54 [LYS] 1A:59 [G] a:52 [ARG] 7:48 [A] ✔
12:54 [LYS] 1A:60 [G] a:52 [ARG] 7:49 [G] ✔
12:54 [LYS] 1A:71 [U] a:52 [ARG] 7:60 [U] ✔
12:54 [LYS] 1A:72 [A] a:52 [ARG] 7:61 [A] ✔
12:54 [LYS] 1A:73 [A] a:52 [ARG] 7:62 [A] ✔
12:62 [THR] 1A:71 [U] a:60 [THR] 7:60 [U] ✔
12:62 [THR] 1A:75 [C] a:60 [THR] 7:64 [U] ✔
12:62 [THR] 1A:76 [C] a:60 [THR] 7:65 [G] ✔
12:62 [THR] 1A:108 [G] a:60 [THR] 7:95 [A] ✔
12:62 [THR] 1A:109 [A] a:60 [THR] 7:96 [A] ✔
12:50 [ILE] 1A:60 [G] a:48 [ILE] 7:49 [G] ✔
12:57 [ILE] 1A:71 [U] a:55 [ILE] 7:60 [U] ✔
12:1 [MET] 1A:95 [G] a:2 [SER] 7:79 [A] ✔
12:1 [MET] 1A:96 [C] a:2 [SER] 7:80 [A] ✔
12:47 [ASN] 1A:60 [G] a:45 [LEU] 7:49 [G] ✔
12:45 [SER] 1A:93 [G] a:42 [GLU] 7:77 [A] ✔
12:45 [SER] 1A:94 [G] a:42 [GLU] 7:78 [G] ✔
12:65 [ASN] 1A:71 [U] a:63 [ASN] 7:60 [U] ✔
12:65 [ASN] 1A:109 [A] a:63 [ASN] 7:96 [A] ✔
12:65 [ASN] 1A:110 [U] a:63 [ASN] 7:97 [U] ✔
12:46 [GLN] 1A:94 [G] a:43 [THR] 7:78 [G] ✔
12:46 [GLN] 1A:95 [G] a:43 [THR] 7:79 [A] ✔
12:29 [LYS] 1A:71 [U] a:26 [LYS] 7:60 [U] ✔
12:6 [VAL] 1A:76 [C] a:6 [LYS] 7:65 [G] ❌ 6AZ3_a_7
12:3 [LEU] 1A:96 [C] a:4 [HIS] 7:80 [A] ❌ 6AZ3_a_7
12:48 [HIS] 1A:95 [G] a:46 [GLY] 7:79 [A] ❌ 6AZ3_a_7
12:47 [ASN] 1A:93 [G] a:45 [LEU] 7:77 [A] ❌ 6AZ3_a_7
12:47 [ASN] 1A:94 [G] a:45 [LEU] 7:78 [G] ❌ 6AZ3_a_7
12:46 [GLN] 1A:93 [G] a:43 [THR] 7:77 [A] ❌ 6AZ3_a_7
12:48 [HIS] 1A:60 [G] a:46 [GLY] 7:49 [G] ❌ 4Y4O_12_1A
12:51 [ARG] 1A:73 [A] a:49 [ARG] 7:62 [A] ❌ 4Y4O_12_1A
12:51 [ARG] 1A:74 [G] a:49 [ARG] 7:63 [G] ❌ 4Y4O_12_1A
12:66 [GLU] 1A:109 [A] a:64 [GLN] 7:96 [A] ❌ 4Y4O_12_1A
12:66 [GLU] 1A:108 [G] a:64 [GLN] 7:95 [A] ❌ 4Y4O_12_1A
12:69 [ARG] 1A:110 [U] a:67 [ARG] 7:97 [U] ❌ 4Y4O_12_1A
12:2 [LYS] 1A:97 [G] a:3 [HIS] 7:82 [C] ❌ 6AZ3_a:3, 6AZ3_7:82 no longer at interface
12:3 [LEU] 1A:97 [G] a:4 [HIS] 7:82 [C] ❌ 6AZ3_7:82 no longer at interface
12:3 [LEU] 1A:98 [U] a:4 [HIS] 7:83 [A] ❌ 6AZ3_7:83 no longer at interface
12:3 [LEU] 1A:100 [G] a:4 [HIS] 7:85 [U] ❌ 6AZ3_7:85 no longer at interface
12:3 [LEU] 1A:101 [A] a:4 [HIS] 7:88 [A] ❌ 6AZ3_7:88 no longer at interface
12:1 [MET] 1A:97 [G] a:2 [SER] 7:82 [C] ❌ 6AZ3_7:82 no longer at interface
12:29 [LYS] 1A:70 [A] a:26 [LYS] 7:59 [A] ❌ 6AZ3_7:59 no longer at interface
12:39 [ALA] 1A:61 [C] a:36 [GLN] 7:50 [U] ❌ 4Y4O_1A:61 no longer at interface
12:51 [ARG] 1A:61 [C] a:49 [ARG] 7:50 [U] ❌ 4Y4O_1A:61 no longer at interface
12:54 [LYS] 1A:58 [U] a:52 [ARG] 7:47 [C] ❌ 4Y4O_1A:58 no longer at interface
12:2 [LYS] 1A:96 [C] a:3 [HIS] 7:80 [A] ❌ 6AZ3_a:3 no longer at interface
12:44 [LEU] 1A:93 [G] a:41 [ALA] 7:77 [A] ❌ 6AZ3_a:41 no longer at interface
12:52 [ASP] 1A:95 [G] a:50 [PRO] 7:79 [A] ❌ 6AZ3_a:50 no longer at interface
12:36 [ARG] 1A:59 [G] a:33 [ARG] 7:48 [A] ❌ 4Y4O_12:36 no longer at interface
12:49 [LYS] 1A:94 [G] a:47 [ARG] 7:78 [G] ❌ 4Y4O_12:49 no longer at interface
12:49 [LYS] 1A:95 [G] a:47 [ARG] 7:79 [A] ❌ 4Y4O_12:49 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L29 (L29p) 0.65 2.63 0.35 0.8 0.73 0.82 0.7 0.68 0.59 0.21 0.57


Other pairs involving 4Y4O_12_1A or 6AZ3_a_7

Total number of entries: 13

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_V_0 6AZ3_a_7 0.59 0.61 1.37 0.33 Ribosomal protein L29 (L29p) compare
1VQ8_V_0 4Y4O_12_1A 0.61 0.93 2.21 0.25 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 6AZ3_a_7 0.59 0.61 1.93 0.38 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 4Y4O_12_1A 0.63 0.93 2.13 0.25 Ribosomal protein L29 (L29p) compare
4Y4O_12_1A 6AZ3_a_7 0.68 0.65 2.63 0.35 Ribosomal protein L29 (L29p) compare
4Y4O_12_1A 7RYG_X_A 0.59 0.96 3.18 0.35 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare
4Y4O_12_1A 7O7Y_Bh_B8 0.60 0.67 2.56 0.29 Ribosomal protein L29 (L29p) compare
4Y4O_12_1A 6S0Z_W_A 0.88 0.96 2.09 0.42 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare
4Y4O_12_1A 7K00_x_a 0.87 0.96 0.91 0.39 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare
6AZ3_a_7 6S0Z_W_A 0.69 0.68 1.53 0.4 Ribosomal protein L29 (L29p) compare
6AZ3_a_7 7RYG_X_A 0.67 0.63 1.87 0.31 Ribosomal protein L29 (L29p) compare
6AZ3_a_7 7O7Y_Bh_B8 0.82 0.94 0.94 0.5 Ribosomal protein L29 (L29p) 5.8S ribosomal RNA compare
6AZ3_a_7 7K00_x_a 0.64 0.66 1.39 0.35 Ribosomal protein L29 (L29p) compare