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All interfaces > All interologs > Interface groups > group117 > 4Y4O_12_1A vs 6S0Z_W_A

Interface analysis


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Common contacts -

4Y4O_12
4Y4O_1A
6S0Z_W
6S0Z_A
Conserved?
12:39 [ALA] 1A:60 [G] W:32 [LEU] A:61 [A] ✔
12:58 [ALA] 1A:71 [U] W:51 [ALA] A:72 [U] ✔
12:58 [ALA] 1A:72 [A] W:51 [ALA] A:73 [A] ✔
12:58 [ALA] 1A:75 [C] W:51 [ALA] A:76 [C] ✔
12:14 [ARG] 1A:76 [C] W:7 [ARG] A:77 [U] ✔
12:14 [ARG] 1A:77 [A] W:7 [ARG] A:78 [U] ✔
12:51 [ARG] 1A:60 [G] W:44 [ARG] A:61 [A] ✔
12:66 [GLU] 1A:76 [C] W:59 [GLU] A:77 [U] ✔
12:55 [ARG] 1A:72 [A] W:48 [LYS] A:73 [A] ✔
12:55 [ARG] 1A:73 [A] W:48 [LYS] A:74 [U] ✔
12:55 [ARG] 1A:74 [G] W:48 [LYS] A:75 [G] ✔
12:55 [ARG] 1A:75 [C] W:48 [LYS] A:76 [C] ✔
12:61 [LEU] 1A:71 [U] W:54 [LYS] A:72 [U] ✔
12:59 [ARG] 1A:75 [C] W:52 [ARG] A:76 [C] ✔
12:59 [ARG] 1A:76 [C] W:52 [ARG] A:77 [U] ✔
12:10 [LEU] 1A:76 [C] W:3 [ALA] A:77 [U] ✔
12:10 [LEU] 1A:77 [A] W:3 [ALA] A:78 [U] ✔
12:48 [HIS] 1A:94 [G] W:41 [ALA] A:95 [A] ✔
12:48 [HIS] 1A:95 [G] W:41 [ALA] A:96 [G] ✔
12:54 [LYS] 1A:59 [G] W:47 [ARG] A:60 [U] ✔
12:54 [LYS] 1A:60 [G] W:47 [ARG] A:61 [A] ✔
12:54 [LYS] 1A:71 [U] W:47 [ARG] A:72 [U] ✔
12:54 [LYS] 1A:72 [A] W:47 [ARG] A:73 [A] ✔
12:54 [LYS] 1A:73 [A] W:47 [ARG] A:74 [U] ✔
12:62 [THR] 1A:71 [U] W:55 [THR] A:72 [U] ✔
12:62 [THR] 1A:75 [C] W:55 [THR] A:76 [C] ✔
12:62 [THR] 1A:76 [C] W:55 [THR] A:77 [U] ✔
12:62 [THR] 1A:109 [A] W:55 [THR] A:110 [A] ✔
12:50 [ILE] 1A:60 [G] W:43 [ILE] A:61 [A] ✔
12:57 [ILE] 1A:71 [U] W:50 [ILE] A:72 [U] ✔
12:47 [ASN] 1A:60 [G] W:40 [THR] A:61 [A] ✔
12:47 [ASN] 1A:93 [G] W:40 [THR] A:94 [A] ✔
12:47 [ASN] 1A:94 [G] W:40 [THR] A:95 [A] ✔
12:45 [SER] 1A:93 [G] W:38 [GLU] A:94 [A] ✔
12:45 [SER] 1A:94 [G] W:38 [GLU] A:95 [A] ✔
12:65 [ASN] 1A:71 [U] W:58 [ARG] A:72 [U] ✔
12:65 [ASN] 1A:109 [A] W:58 [ARG] A:110 [A] ✔
12:65 [ASN] 1A:110 [U] W:58 [ARG] A:111 [U] ✔
12:46 [GLN] 1A:94 [G] W:39 [GLU] A:95 [A] ✔
12:46 [GLN] 1A:95 [G] W:39 [GLU] A:96 [G] ✔
12:51 [ARG] 1A:59 [G] W:44 [ARG] A:60 [U] ❌ 6S0Z_W_A
12:46 [GLN] 1A:93 [G] W:39 [GLU] A:94 [A] ❌ 6S0Z_W_A
12:51 [ARG] 1A:73 [A] W:44 [ARG] A:74 [U] ❌ 4Y4O_12_1A
12:51 [ARG] 1A:75 [C] W:44 [ARG] A:76 [C] ❌ 4Y4O_12_1A
12:51 [ARG] 1A:74 [G] W:44 [ARG] A:75 [G] ❌ 4Y4O_12_1A
12:69 [ARG] 1A:108 [G] W:62 [ILE] A:109 [G] ❌ 6S0Z_W:62, 6S0Z_A:109 no longer at interface
12:51 [ARG] 1A:86 [C] W:44 [ARG] A:87 [U] ❌ 6S0Z_A:87 no longer at interface
12:62 [THR] 1A:108 [G] W:55 [THR] A:109 [G] ❌ 6S0Z_A:109 no longer at interface
12:29 [LYS] 1A:70 [A] W:22 [LYS] A:71 [A] ❌ 6S0Z_W:22, 6S0Z_A:71 no longer at interface
12:54 [LYS] 1A:58 [U] W:47 [ARG] A:59 [U] ❌ 4Y4O_1A:58 no longer at interface
12:69 [ARG] 1A:109 [A] W:62 [ILE] A:110 [A] ❌ 6S0Z_W:62 no longer at interface
12:44 [LEU] 1A:93 [G] W:37 [LEU] A:94 [A] ❌ 6S0Z_W:37 no longer at interface
12:52 [ASP] 1A:95 [G] W:45 [THR] A:96 [G] ❌ 6S0Z_W:45 no longer at interface
12:29 [LYS] 1A:71 [U] W:22 [LYS] A:72 [U] ❌ 6S0Z_W:22 no longer at interface
12:36 [ARG] 1A:59 [G] W:29 [ARG] A:60 [U] ❌ 4Y4O_12:36 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA 0.96 2.09 0.42 0.83 0.97 0.95 0.93 0.88 0.85 0.33 0.67


Other pairs involving 4Y4O_12_1A or 6S0Z_W_A

Total number of entries: 13

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_V_0 4Y4O_12_1A 0.63 0.93 2.13 0.25 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 6S0Z_W_A 0.71 0.93 2.68 0.58 Ribosomal protein L29 (L29p) compare
6S0Z_W_A 7RYG_X_A 0.86 0.98 2.21 0.53 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare
6S0Z_W_A 7O7Y_Bh_B8 0.63 0.7 1.77 0.2 Ribosomal protein L29 (L29p) compare
6S0Z_W_A 7K00_x_a 0.86 0.97 1.52 0.42 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare
6AZ3_a_7 6S0Z_W_A 0.69 0.68 1.53 0.4 Ribosomal protein L29 (L29p) compare
4Y4O_12_1A 6AZ3_a_7 0.68 0.65 2.63 0.35 Ribosomal protein L29 (L29p) compare
4Y4O_12_1A 7RYG_X_A 0.59 0.96 3.18 0.35 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare
4Y4O_12_1A 7O7Y_Bh_B8 0.60 0.67 2.56 0.29 Ribosomal protein L29 (L29p) compare
4Y4O_12_1A 6S0Z_W_A 0.88 0.96 2.09 0.42 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare
4Y4O_12_1A 7K00_x_a 0.87 0.96 0.91 0.39 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare
1VQ8_V_0 4Y4O_12_1A 0.61 0.93 2.21 0.25 Ribosomal protein L29 (L29p) compare
1VQ8_V_0 6S0Z_W_A 0.70 0.93 2.86 0.53 Ribosomal protein L29 (L29p) compare