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All interfaces > All interologs > Interface groups > group117 > 4Y4O_12_1A vs 7K00_x_a

Interface analysis


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Common contacts -

4Y4O_12
4Y4O_1A
7K00_x
7K00_a
Conserved?
12:58 [ALA] 1A:71 [U] x:51 [ALA] a:72 [U] ✔
12:58 [ALA] 1A:72 [A] x:51 [ALA] a:73 [A] ✔
12:58 [ALA] 1A:75 [C] x:51 [ALA] a:76 [C] ✔
12:14 [ARG] 1A:76 [C] x:7 [ARG] a:77 [G] ✔
12:14 [ARG] 1A:77 [A] x:7 [ARG] a:78 [U] ✔
12:51 [ARG] 1A:60 [G] x:44 [LYS] a:61 [C] ✔
12:51 [ARG] 1A:86 [C] x:44 [LYS] a:87 [U] ✔
12:66 [GLU] 1A:76 [C] x:59 [GLU] a:77 [G] ✔
12:55 [ARG] 1A:72 [A] x:48 [ARG] a:73 [A] ✔
12:55 [ARG] 1A:73 [A] x:48 [ARG] a:74 [A] ✔
12:55 [ARG] 1A:74 [G] x:48 [ARG] a:75 [G] ✔
12:55 [ARG] 1A:75 [C] x:48 [ARG] a:76 [C] ✔
12:61 [LEU] 1A:71 [U] x:54 [LYS] a:72 [U] ✔
12:59 [ARG] 1A:75 [C] x:52 [ARG] a:76 [C] ✔
12:59 [ARG] 1A:76 [C] x:52 [ARG] a:77 [G] ✔
12:10 [LEU] 1A:76 [C] x:3 [ALA] a:77 [G] ✔
12:10 [LEU] 1A:77 [A] x:3 [ALA] a:78 [U] ✔
12:48 [HIS] 1A:94 [G] x:41 [HIS] a:95 [A] ✔
12:48 [HIS] 1A:95 [G] x:41 [HIS] a:96 [C] ✔
12:54 [LYS] 1A:59 [G] x:47 [ARG] a:60 [G] ✔
12:54 [LYS] 1A:60 [G] x:47 [ARG] a:61 [C] ✔
12:54 [LYS] 1A:72 [A] x:47 [ARG] a:73 [A] ✔
12:54 [LYS] 1A:73 [A] x:47 [ARG] a:74 [A] ✔
12:62 [THR] 1A:71 [U] x:55 [THR] a:72 [U] ✔
12:62 [THR] 1A:75 [C] x:55 [THR] a:76 [C] ✔
12:62 [THR] 1A:76 [C] x:55 [THR] a:77 [G] ✔
12:62 [THR] 1A:108 [G] x:55 [THR] a:110 [G] ✔
12:62 [THR] 1A:109 [A] x:55 [THR] a:111 [A] ✔
12:50 [ILE] 1A:60 [G] x:43 [LEU] a:61 [C] ✔
12:57 [ILE] 1A:71 [U] x:50 [VAL] a:72 [U] ✔
12:47 [ASN] 1A:60 [G] x:40 [SER] a:61 [C] ✔
12:47 [ASN] 1A:93 [G] x:40 [SER] a:94 [A] ✔
12:47 [ASN] 1A:94 [G] x:40 [SER] a:95 [A] ✔
12:45 [SER] 1A:93 [G] x:38 [GLN] a:94 [A] ✔
12:45 [SER] 1A:94 [G] x:38 [GLN] a:95 [A] ✔
12:52 [ASP] 1A:95 [G] x:45 [GLN] a:96 [C] ✔
12:65 [ASN] 1A:71 [U] x:58 [ASN] a:72 [U] ✔
12:65 [ASN] 1A:109 [A] x:58 [ASN] a:111 [A] ✔
12:65 [ASN] 1A:110 [U] x:58 [ASN] a:112 [U] ✔
12:46 [GLN] 1A:94 [G] x:39 [GLN] a:95 [A] ✔
12:46 [GLN] 1A:95 [G] x:39 [GLN] a:96 [C] ✔
12:51 [ARG] 1A:59 [G] x:44 [LYS] a:60 [G] ❌ 7K00_x_a
12:54 [LYS] 1A:71 [U] x:47 [ARG] a:72 [U] ❌ 7K00_x_a
12:46 [GLN] 1A:93 [G] x:39 [GLN] a:94 [A] ❌ 7K00_x_a
12:10 [LEU] 1A:100 [G] x:3 [ALA] a:102 [U] ❌ 4Y4O_12_1A
12:52 [ASP] 1A:96 [C] x:45 [GLN] a:97 [C] ❌ 4Y4O_12_1A
12:29 [LYS] 1A:70 [A] x:22 [LEU] a:71 [A] ❌ 7K00_x:22, 7K00_a:71 no longer at interface
12:69 [ARG] 1A:108 [G] x:62 [GLY] a:110 [G] ❌ 7K00_x:62 no longer at interface
12:69 [ARG] 1A:109 [A] x:62 [GLY] a:111 [A] ❌ 7K00_x:62 no longer at interface
12:39 [ALA] 1A:60 [G] x:32 [ALA] a:61 [C] ❌ 7K00_x:32 no longer at interface
12:44 [LEU] 1A:93 [G] x:37 [LEU] a:94 [A] ❌ 7K00_x:37 no longer at interface
12:29 [LYS] 1A:71 [U] x:22 [LEU] a:72 [U] ❌ 7K00_x:22 no longer at interface
12:9 [GLN] 1A:100 [G] x:2 [LYS] a:102 [U] ❌ 4Y4O_12:9 no longer at interface
12:11 [GLU] 1A:100 [G] x:4 [LYS] a:102 [U] ❌ 4Y4O_12:11 no longer at interface
12:11 [GLU] 1A:77 [A] x:4 [LYS] a:78 [U] ❌ 4Y4O_12:11 no longer at interface
12:49 [LYS] 1A:94 [G] x:42 [LEU] a:95 [A] ❌ 4Y4O_12:49 no longer at interface
12:12 [GLU] 1A:100 [G] x:5 [GLU] a:102 [U] ❌ 4Y4O_12:12 no longer at interface
12:70 [GLN] 1A:110 [U] x:63 [ALA] a:112 [U] ❌ 4Y4O_12:70 no longer at interface
12:70 [GLN] 1A:109 [A] x:63 [ALA] a:111 [A] ❌ 4Y4O_12:70 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA 0.96 0.91 0.39 0.93 0.96 0.78 1.0 0.87 0.85 0.36 0.72


Other pairs involving 4Y4O_12_1A or 7K00_x_a

Total number of entries: 11

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_V_0 4Y4O_12_1A 0.63 0.93 2.13 0.25 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 7K00_x_a 0.71 0.91 2.22 0.39 Ribosomal protein L29 (L29p) compare
6S0Z_W_A 7K00_x_a 0.86 0.97 1.52 0.42 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare
6AZ3_a_7 7K00_x_a 0.64 0.66 1.39 0.35 Ribosomal protein L29 (L29p) compare
4Y4O_12_1A 6AZ3_a_7 0.68 0.65 2.63 0.35 Ribosomal protein L29 (L29p) compare
4Y4O_12_1A 7RYG_X_A 0.59 0.96 3.18 0.35 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare
4Y4O_12_1A 7O7Y_Bh_B8 0.60 0.67 2.56 0.29 Ribosomal protein L29 (L29p) compare
4Y4O_12_1A 6S0Z_W_A 0.88 0.96 2.09 0.42 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare
4Y4O_12_1A 7K00_x_a 0.87 0.96 0.91 0.39 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare
1VQ8_V_0 7K00_x_a 0.69 0.91 2.39 0.39 Ribosomal protein L29 (L29p) compare
1VQ8_V_0 4Y4O_12_1A 0.61 0.93 2.21 0.25 Ribosomal protein L29 (L29p) compare