RNAprotDB

All interfaces > All interologs > Interface groups > group117 > 4Y4O_12_1A vs 7RYG_X_A

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

4Y4O_12
4Y4O_1A
7RYG_X
7RYG_A
Conserved?
12:39 [ALA] 1A:60 [G] X:32 [LYS] A:68 [A] ✔
12:58 [ALA] 1A:71 [U] X:51 [ALA] A:79 [A] ✔
12:58 [ALA] 1A:72 [A] X:51 [ALA] A:80 [A] ✔
12:58 [ALA] 1A:75 [C] X:51 [ALA] A:83 [C] ✔
12:51 [ARG] 1A:60 [G] X:44 [GLN] A:68 [A] ✔
12:66 [GLU] 1A:76 [C] X:59 [GLU] A:84 [U] ✔
12:55 [ARG] 1A:72 [A] X:48 [LYS] A:80 [A] ✔
12:55 [ARG] 1A:74 [G] X:48 [LYS] A:82 [G] ✔
12:55 [ARG] 1A:75 [C] X:48 [LYS] A:83 [C] ✔
12:61 [LEU] 1A:71 [U] X:54 [LYS] A:79 [A] ✔
12:59 [ARG] 1A:75 [C] X:52 [ARG] A:83 [C] ✔
12:59 [ARG] 1A:76 [C] X:52 [ARG] A:84 [U] ✔
12:48 [HIS] 1A:95 [G] X:41 [HIS] A:104 [C] ✔
12:54 [LYS] 1A:59 [G] X:47 [ARG] A:67 [G] ✔
12:54 [LYS] 1A:72 [A] X:47 [ARG] A:80 [A] ✔
12:54 [LYS] 1A:73 [A] X:47 [ARG] A:81 [A] ✔
12:62 [THR] 1A:71 [U] X:55 [THR] A:79 [A] ✔
12:62 [THR] 1A:75 [C] X:55 [THR] A:83 [C] ✔
12:62 [THR] 1A:76 [C] X:55 [THR] A:84 [U] ✔
12:62 [THR] 1A:108 [G] X:55 [THR] A:117 [G] ✔
12:57 [ILE] 1A:71 [U] X:50 [ILE] A:79 [A] ✔
12:47 [ASN] 1A:94 [G] X:40 [SER] A:103 [U] ✔
12:45 [SER] 1A:94 [G] X:38 [GLY] A:103 [U] ✔
12:65 [ASN] 1A:71 [U] X:58 [THR] A:79 [A] ✔
12:65 [ASN] 1A:109 [A] X:58 [THR] A:118 [A] ✔
12:65 [ASN] 1A:110 [U] X:58 [THR] A:119 [U] ✔
12:46 [GLN] 1A:94 [G] X:39 [LYS] A:103 [U] ✔
12:46 [GLN] 1A:95 [G] X:39 [LYS] A:104 [C] ✔
12:51 [ARG] 1A:59 [G] X:44 [GLN] A:67 [G] ❌ 7RYG_X_A
12:55 [ARG] 1A:73 [A] X:48 [LYS] A:81 [A] ❌ 7RYG_X_A
12:48 [HIS] 1A:94 [G] X:41 [HIS] A:103 [U] ❌ 7RYG_X_A
12:54 [LYS] 1A:60 [G] X:47 [ARG] A:68 [A] ❌ 7RYG_X_A
12:54 [LYS] 1A:71 [U] X:47 [ARG] A:79 [A] ❌ 7RYG_X_A
12:62 [THR] 1A:109 [A] X:55 [THR] A:118 [A] ❌ 7RYG_X_A
12:47 [ASN] 1A:60 [G] X:40 [SER] A:68 [A] ❌ 7RYG_X_A
12:48 [HIS] 1A:96 [C] X:41 [HIS] A:105 [C] ❌ 4Y4O_12_1A
12:51 [ARG] 1A:86 [C] X:44 [GLN] A:94 [C] ❌ 7RYG_A:94 no longer at interface
12:47 [ASN] 1A:93 [G] X:40 [SER] A:102 [A] ❌ 7RYG_A:102 no longer at interface
12:44 [LEU] 1A:93 [G] X:37 [LEU] A:102 [A] ❌ 7RYG_X:37, 7RYG_A:102 no longer at interface
12:45 [SER] 1A:93 [G] X:38 [GLY] A:102 [A] ❌ 7RYG_A:102 no longer at interface
12:46 [GLN] 1A:93 [G] X:39 [LYS] A:102 [A] ❌ 7RYG_A:102 no longer at interface
12:29 [LYS] 1A:70 [A] X:22 [GLN] A:78 [A] ❌ 7RYG_X:22, 7RYG_A:78 no longer at interface
12:54 [LYS] 1A:58 [U] X:47 [ARG] A:66 [U] ❌ 4Y4O_1A:58 no longer at interface
12:14 [ARG] 1A:76 [C] X:8 [GLU] A:84 [U] ❌ 7RYG_X:8 no longer at interface
12:14 [ARG] 1A:77 [A] X:8 [GLU] A:85 [C] ❌ 7RYG_X:8 no longer at interface
12:10 [LEU] 1A:76 [C] X:4 [LYS] A:84 [U] ❌ 7RYG_X:4 no longer at interface
12:10 [LEU] 1A:77 [A] X:4 [LYS] A:85 [C] ❌ 7RYG_X:4 no longer at interface
12:50 [ILE] 1A:60 [G] X:43 [VAL] A:68 [A] ❌ 7RYG_X:43 no longer at interface
12:52 [ASP] 1A:95 [G] X:45 [VAL] A:104 [C] ❌ 7RYG_X:45 no longer at interface
12:29 [LYS] 1A:71 [U] X:22 [GLN] A:79 [A] ❌ 7RYG_X:22 no longer at interface
12:9 [GLN] 1A:76 [C] X:3 [THR] A:84 [U] ❌ 4Y4O_12:9 no longer at interface
12:9 [GLN] 1A:77 [A] X:3 [THR] A:85 [C] ❌ 4Y4O_12:9 no longer at interface
12:13 [ALA] 1A:76 [C] X:7 [ARG] A:84 [U] ❌ 4Y4O_12:13 no longer at interface
12:13 [ALA] 1A:77 [A] X:7 [ARG] A:85 [C] ❌ 4Y4O_12:13 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA 0.96 3.18 0.35 0.93 0.96 0.88 0.94 0.59 0.46 0.14 0.69


Other pairs involving 4Y4O_12_1A or 7RYG_X_A

Total number of entries: 12

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_V_0 4Y4O_12_1A 0.63 0.93 2.13 0.25 Ribosomal protein L29 (L29p) compare
1VQ8_V_0 4Y4O_12_1A 0.61 0.93 2.21 0.25 Ribosomal protein L29 (L29p) compare
4Y4O_12_1A 6AZ3_a_7 0.68 0.65 2.63 0.35 Ribosomal protein L29 (L29p) compare
4Y4O_12_1A 6S0Z_W_A 0.88 0.96 2.09 0.42 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare
4Y4O_12_1A 7K00_x_a 0.87 0.96 0.91 0.39 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare
4Y4O_12_1A 7O7Y_Bh_B8 0.60 0.67 2.56 0.29 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 7RYG_X_A 0.46 0.92 3.85 0.41 Ribosomal protein L29 (L29p) compare
6S0Z_W_A 7RYG_X_A 0.86 0.98 2.21 0.53 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare
6AZ3_a_7 7RYG_X_A 0.67 0.63 1.87 0.31 Ribosomal protein L29 (L29p) compare
7O7Y_Bh_B8 7RYG_X_A 0.60 0.65 2.11 0.12 Ribosomal protein L29 (L29p) compare
4Y4O_12_1A 7RYG_X_A 0.59 0.96 3.18 0.35 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare
1VQ8_V_0 7RYG_X_A 0.42 0.92 3.91 0.41 Ribosomal protein L29 (L29p) compare