RNAprotDB

All interfaces > All interologs > Interface groups > group117 > 6AZ3_a_7

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

6AZ3_a
6AZ3_7
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
a:2 [SER] 7:79 [A] 4.51 43.06
a:2 [SER] 7:80 [A] 4.29 43.06
a:2 [SER] 7:87 [A] 3.5 base:BB 43.06
a:4 [HIS] 7:87 [A] 3.48 base/AA stacks 49.16
a:6 [LYS] 7:86 [C] 3.53 63.98
a:6 [LYS] 7:87 [A] 3.26 63.98
a:7 [ILE] 7:65 [G] 3.6 7:93 [C] 70.22
a:7 [ILE] 7:66 [G] 3.34 7:92 [C] 70.22
a:8 [LYS] 7:86 [C] 3.35 10.82
a:11 [ARG] 7:65 [G] 3.28 7:93 [C] 78.63
a:11 [ARG] 7:66 [G] 4.31 7:92 [C] 78.63
a:26 [LYS] 7:60 [U] 4.2 80.21
a:33 [ARG] 7:48 [A] 4.66 7:54 [G] 79.59
a:36 [GLN] 7:49 [G] 3.54 7:76 [C] 63.72
a:36 [GLN] 7:50 [U] 3.24 7:75 [OMG] 63.72
a:42 [GLU] 7:77 [A] 3.61 48.32
a:42 [GLU] 7:78 [G] 3.27 48.32
a:43 [THR] 7:78 [G] 4.0 55.45
a:43 [THR] 7:79 [A] 4.19 55.45
a:45 [LEU] 7:49 [G] 3.28 7:76 [C] 64.62
a:46 [GLY] 7:49 [G] 4.29 7:76 [C] 58.29
a:46 [GLY] 7:78 [G] 3.76 58.29
a:47 [ARG] 7:78 [G] 3.17 sugar:SC 69.52
a:47 [ARG] 7:79 [A] 2.85 69.52
a:48 [ILE] 7:49 [G] 3.32 7:76 [C] 92.69
a:49 [ARG] 7:48 [A] 3.69 7:54 [G] 55.99
a:49 [ARG] 7:49 [G] 3.23 7:76 [C] 55.99
a:49 [ARG] 7:50 [U] 4.39 7:75 [OMG] 55.99
a:49 [ARG] 7:62 [A] 4.44 7:55 [U] 55.99
a:49 [ARG] 7:63 [G] 3.91 7:96 [A] 55.99
a:52 [ARG] 7:47 [C] 4.09 7:56 [G] 92.54
a:52 [ARG] 7:48 [A] 3.81 7:54 [G] 92.54
a:52 [ARG] 7:49 [G] 3.53 7:76 [C] 92.54
a:52 [ARG] 7:60 [U] 4.37 92.54
a:52 [ARG] 7:61 [A] 3.56 92.54
a:52 [ARG] 7:62 [A] 2.68 7:55 [U] 92.54
a:53 [LYS] 7:61 [A] 2.76 85.89
a:53 [LYS] 7:62 [A] 2.32 7:55 [U] 85.89
a:53 [LYS] 7:63 [G] 2.45 7:96 [A] sugar:SC 85.89
a:53 [LYS] 7:64 [U] 3.77 7:95 [A] 85.89
a:55 [ILE] 7:60 [U] 4.5 93.62
a:56 [ALA] 7:60 [U] 3.64 98.79
a:56 [ALA] 7:61 [A] 4.33 98.79
a:56 [ALA] 7:64 [U] 2.76 7:95 [A] 98.79
a:57 [ARG] 7:64 [U] 3.38 7:95 [A] 92.41
a:57 [ARG] 7:65 [G] 3.43 7:93 [C] 92.41
a:59 [LEU] 7:60 [U] 3.52 74.34
a:60 [THR] 7:60 [U] 3.92 99.0
a:60 [THR] 7:64 [U] 3.27 7:95 [A] base:SC 99.0
a:60 [THR] 7:65 [G] 4.47 7:93 [C] 99.0
a:60 [THR] 7:95 [A] 4.43 7:64 [U] 99.0
a:60 [THR] 7:96 [A] 4.26 7:63 [G] 99.0
a:63 [ASN] 7:60 [U] 2.93 base:SC 70.06
a:63 [ASN] 7:96 [A] 3.9 7:63 [G] 70.06
a:63 [ASN] 7:97 [U] 3.97 70.06
a:64 [GLN] 7:65 [G] 4.0 7:93 [C] sugar:SC 68.13
a:64 [GLN] 7:95 [A] 2.84 7:64 [U] base:SC 68.13
a:64 [GLN] 7:96 [A] 4.37 7:63 [G] 68.13
a:67 [ARG] 7:95 [A] 4.88 7:64 [U] 69.64
a:67 [ARG] 7:96 [A] 2.75 7:63 [G] 69.64
a:67 [ARG] 7:97 [U] 4.02 69.64
a:71 [LYS] 7:96 [A] 3.3 7:63 [G] 79.7
a:85 [LYS] 7:38 [U] 3.17 46.79
a:86 [VAL] 7:38 [U] 4.88 85.89
a:88 [ARG] 7:38 [U] 3.37 92.33
a:89 [ALA] 7:38 [U] 4.08 36.19
a:90 [LYS] 7:37 [U] 4.42 7:105 [C] 93.1
a:90 [LYS] 7:38 [U] 3.53 93.1
a:90 [LYS] 7:39 [G] 2.81 7:103 [A] 93.1
a:91 [LEU] 7:36 [G] 3.65 61.1
a:92 [THR] 7:35 [C] 3.27 98.33
a:92 [THR] 7:36 [G] 3.1 98.33
a:93 [HIS] 7:35 [C] 4.91 84.96
a:93 [HIS] 7:36 [G] 2.74 base/AA stacks 84.96
a:93 [HIS] 7:37 [U] 2.78 7:105 [C] 84.96
a:94 [ARG] 7:34 [U] 3.24 1:369 [A] sugar:SC 92.87
a:94 [ARG] 7:35 [C] 3.14 92.87
a:94 [ARG] 7:36 [G] 4.14 92.87
a:95 [ARG] 7:33 [U] 4.68 1:370 [G] 39.88
a:95 [ARG] 7:34 [U] 2.59 1:369 [A] 39.88
a:96 [ARG] 7:37 [U] 3.18 7:105 [C] 96.32
a:96 [ARG] 7:38 [U] 3.3 base/AA stacks 96.32

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group117 6AZ3_a_7 a: 60s_ribosomal_protein_l35_putative/genedb:lmjf.26.2330/genedb:lmjf.26.2340, Leishmania donovani (natural) 7: rRNA 5.8s, Leishmania donovani (natural) E9BIP6 Ribosomal protein L29 (L29p) 5.8S ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_a_7 7RYG_X_A 0.67 0.63 1.87 0.31 Ribosomal protein L29 (L29p) compare
1VQ8_V_0 6AZ3_a_7 0.59 0.61 1.37 0.33 Ribosomal protein L29 (L29p) compare
6AZ3_a_7 7K00_x_a 0.64 0.66 1.39 0.35 Ribosomal protein L29 (L29p) compare
4Y4O_12_1A 6AZ3_a_7 0.68 0.65 2.63 0.35 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 6AZ3_a_7 0.59 0.61 1.93 0.38 Ribosomal protein L29 (L29p) compare
6AZ3_a_7 6S0Z_W_A 0.69 0.68 1.53 0.4 Ribosomal protein L29 (L29p) compare
6AZ3_a_7 7O7Y_Bh_B8 0.82 0.94 0.94 0.5 Ribosomal protein L29 (L29p) 5.8S ribosomal RNA compare