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All interfaces > All interologs > Interface groups > group117 > 6S0Z_W_A

Interface analysis

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Interface

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Rim - Core

Contacts -

6S0Z_W
6S0Z_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
W:3 [ALA] A:77 [U] 4.2 A:108 [A] 14.33
W:3 [ALA] A:78 [U] 4.19 A:107 [G] 14.33
W:7 [ARG] A:77 [U] 2.73 A:108 [A] sugar:SC 72.87
W:7 [ARG] A:78 [U] 3.44 A:107 [G] 72.87
W:29 [ARG] A:60 [U] 4.39 82.28
W:32 [LEU] A:61 [A] 4.62 A:93 [U] 38.77
W:38 [GLU] A:94 [A] 4.76 61.78
W:38 [GLU] A:95 [A] 3.91 A:87 [U] 61.78
W:39 [GLU] A:95 [A] 4.14 A:87 [U] 78.27
W:39 [GLU] A:96 [G] 3.73 A:86 [C] 78.27
W:40 [THR] A:61 [A] 3.49 A:93 [U] 63.35
W:40 [THR] A:94 [A] 4.15 63.35
W:40 [THR] A:95 [A] 3.51 A:87 [U] 63.35
W:41 [ALA] A:95 [A] 3.19 A:87 [U] sugar:BB 66.48
W:41 [ALA] A:96 [G] 3.54 A:86 [C] 66.48
W:43 [ILE] A:61 [A] 4.74 A:93 [U] 73.46
W:44 [ARG] A:61 [A] 3.79 A:93 [U] 72.31
W:44 [ARG] A:74 [U] 4.88 72.31
W:44 [ARG] A:75 [G] 2.51 A:110 [A] 72.31
W:44 [ARG] A:76 [C] 4.98 A:109 [G] 72.31
W:47 [ARG] A:59 [U] 3.43 A:68 [A] sugar:SC 88.36
W:47 [ARG] A:60 [U] 4.23 88.36
W:47 [ARG] A:61 [A] 4.16 A:93 [U] 88.36
W:47 [ARG] A:72 [U] 4.73 88.36
W:47 [ARG] A:73 [A] 3.42 88.36
W:47 [ARG] A:74 [U] 3.35 88.36
W:48 [LYS] A:73 [A] 3.9 82.86
W:48 [LYS] A:74 [U] 3.19 82.86
W:48 [LYS] A:75 [G] 2.18 A:110 [A] sugar:SC 82.86
W:48 [LYS] A:76 [C] 3.59 A:109 [G] 82.86
W:50 [ILE] A:72 [U] 4.61 92.14
W:51 [ALA] A:72 [U] 3.81 99.0
W:51 [ALA] A:73 [A] 4.58 99.0
W:51 [ALA] A:76 [C] 3.96 A:109 [G] 99.0
W:52 [ARG] A:76 [C] 3.1 A:109 [G] 97.21
W:52 [ARG] A:77 [U] 2.65 A:108 [A] 97.21
W:54 [LYS] A:72 [U] 3.07 63.93
W:55 [THR] A:72 [U] 3.5 98.98
W:55 [THR] A:76 [C] 3.4 A:109 [G] sugar:SC 98.98
W:55 [THR] A:77 [U] 4.5 A:108 [A] 98.98
W:55 [THR] A:110 [A] 4.84 A:75 [G] 98.98
W:58 [ARG] A:72 [U] 4.18 45.37
W:58 [ARG] A:110 [A] 3.39 A:75 [G] 45.37
W:58 [ARG] A:111 [U] 3.08 45.37
W:59 [GLU] A:77 [U] 4.39 A:108 [A] 62.23

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group117 6S0Z_W_A W: 50s ribosomal protein l29, Staphylococcus aureus (natural) A: 23s ribosomal RNA, Staphylococcus aureus (natural) A0A077W1J5 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_V_0 6S0Z_W_A 0.71 0.93 2.68 0.58 Ribosomal protein L29 (L29p) compare
6S0Z_W_A 7RYG_X_A 0.86 0.98 2.21 0.53 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare
6S0Z_W_A 7O7Y_Bh_B8 0.63 0.7 1.77 0.2 Ribosomal protein L29 (L29p) compare
6S0Z_W_A 7K00_x_a 0.86 0.97 1.52 0.42 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare
6AZ3_a_7 6S0Z_W_A 0.69 0.68 1.53 0.4 Ribosomal protein L29 (L29p) compare
4Y4O_12_1A 6S0Z_W_A 0.88 0.96 2.09 0.42 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare
1VQ8_V_0 6S0Z_W_A 0.70 0.93 2.86 0.53 Ribosomal protein L29 (L29p) compare