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All interfaces > All interologs > Interface groups > group117 > 7K00_x_a

Interface analysis

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7K00_x
7K00_a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
x:2 [LYS] a:102 [U] 3.43 73.43
x:3 [ALA] a:77 [G] 3.68 a:109 [C] 35.15
x:3 [ALA] a:78 [U] 3.77 a:108 [G] 35.15
x:3 [ALA] a:102 [U] 3.74 35.15
x:4 [LYS] a:78 [U] 2.87 a:108 [G] 47.73
x:4 [LYS] a:102 [U] 3.33 base:BB 47.73
x:5 [GLU] a:102 [U] 4.82 76.09
x:7 [ARG] a:77 [G] 2.69 a:109 [C] sugar:SC 80.18
x:7 [ARG] a:78 [U] 3.67 a:108 [G] 80.18
x:38 [GLN] a:94 [A] 4.59 44.19
x:38 [GLN] a:95 [A] 2.96 a:87 [U] 44.19
x:39 [GLN] a:95 [A] 3.34 a:87 [U] 76.37
x:39 [GLN] a:96 [C] 3.09 a:86 [G] 76.37
x:40 [SER] a:61 [C] 3.24 64.56
x:40 [SER] a:94 [A] 4.21 64.56
x:40 [SER] a:95 [A] 3.11 a:87 [U] 64.56
x:41 [HIS] a:95 [A] 2.48 a:87 [U] sugar:BB, sugar:SC 69.24
x:41 [HIS] a:96 [C] 3.12 a:86 [G] 69.24
x:42 [LEU] a:95 [A] 4.94 a:87 [U] 36.72
x:43 [LEU] a:61 [C] 3.48 68.04
x:44 [LYS] a:61 [C] 3.46 67.53
x:44 [LYS] a:87 [U] 3.44 a:95 [A] sugar:SC 67.53
x:45 [GLN] a:96 [C] 4.68 a:86 [G] 23.92
x:45 [GLN] a:97 [C] 4.3 a:85 [G] 23.92
x:47 [ARG] a:60 [G] 3.57 89.74
x:47 [ARG] a:61 [C] 2.43 89.74
x:47 [ARG] a:73 [A] 3.62 89.74
x:47 [ARG] a:74 [A] 4.39 a:67 [U] 89.74
x:48 [ARG] a:73 [A] 4.68 81.0
x:48 [ARG] a:74 [A] 4.11 a:67 [U] 81.0
x:48 [ARG] a:75 [G] 3.24 a:111 [A] 81.0
x:48 [ARG] a:76 [C] 3.66 a:110 [G] 81.0
x:50 [VAL] a:72 [U] 4.43 90.69
x:51 [ALA] a:72 [U] 3.38 99.0
x:51 [ALA] a:73 [A] 4.5 99.0
x:51 [ALA] a:76 [C] 3.61 a:110 [G] 99.0
x:52 [ARG] a:76 [C] 3.28 a:110 [G] 91.37
x:52 [ARG] a:77 [G] 2.87 a:109 [C] 91.37
x:54 [LYS] a:72 [U] 3.54 56.01
x:55 [THR] a:72 [U] 3.46 99.0
x:55 [THR] a:76 [C] 2.64 a:110 [G] sugar:SC 99.0
x:55 [THR] a:77 [G] 3.61 a:109 [C] 99.0
x:55 [THR] a:110 [G] 4.38 a:76 [C] 99.0
x:55 [THR] a:111 [A] 4.72 a:75 [G] 99.0
x:58 [ASN] a:72 [U] 3.65 67.28
x:58 [ASN] a:111 [A] 3.24 a:75 [G] 67.28
x:58 [ASN] a:112 [U] 2.91 67.28
x:59 [GLU] a:77 [G] 3.03 a:109 [C] sugar:SC 76.83
x:63 [ALA] a:111 [A] 3.96 a:75 [G] 47.41
x:63 [ALA] a:112 [U] 4.58 47.41

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group117 7K00_x_a x: 50s ribosomal protein l29, Escherichia coli (natural) a: 23s rRNA, Escherichia coli (natural) P0A7M6 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_V_0 7K00_x_a 0.71 0.91 2.22 0.39 Ribosomal protein L29 (L29p) compare
6S0Z_W_A 7K00_x_a 0.86 0.97 1.52 0.42 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare
6AZ3_a_7 7K00_x_a 0.64 0.66 1.39 0.35 Ribosomal protein L29 (L29p) compare
4Y4O_12_1A 7K00_x_a 0.87 0.96 0.91 0.39 Ribosomal protein L29 (L29p) Bacterial large subunit ribosomal RNA compare
1VQ8_V_0 7K00_x_a 0.69 0.91 2.39 0.39 Ribosomal protein L29 (L29p) compare