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All interfaces > All interologs > Interface groups > group117 > 7O7Y_Bh_B8

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7O7Y_Bh
7O7Y_B8
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
Bh:2 [ALA] B8:81 [C] 2.38 base:BB, sugar:BB 0.0
Bh:2 [ALA] B8:82 [A] 3.34 0.0
Bh:3 [LYS] B8:81 [C] 3.42 base:BB 0.0
Bh:3 [LYS] B8:82 [A] 3.43 0.0
Bh:3 [LYS] B8:83 [C] 2.99 0.0
Bh:3 [LYS] B8:84 [A] 2.63 sugar:SC 0.0
Bh:5 [LYS] B8:86 [U] 4.68 0.0
Bh:5 [LYS] B8:87 [G] 2.99 B8:71 [A] 0.0
Bh:6 [ALA] B8:65 [A] 3.39 B8:93 [C] 0.0
Bh:6 [ALA] B8:66 [A] 3.88 B8:92 [U] 0.0
Bh:7 [ARG] B8:66 [A] 3.79 B8:92 [U] 0.0
Bh:7 [ARG] B8:86 [U] 3.67 0.0
Bh:7 [ARG] B8:87 [G] 3.16 B8:71 [A] 0.0
Bh:10 [ARG] B8:65 [A] 2.75 B8:93 [C] sugar:SC 0.0
Bh:10 [ARG] B8:66 [A] 4.52 B8:92 [U] 0.0
Bh:35 [LYS] B8:49 [G] 3.38 B8:76 [C] 0.0
Bh:35 [LYS] B8:50 [C] 3.13 B8:75 [OMG] 0.0
Bh:41 [ALA] B8:77 [A] 3.48 0.0
Bh:41 [ALA] B8:78 [G] 3.91 0.0
Bh:42 [SER] B8:78 [G] 3.3 sugar:BB 0.0
Bh:42 [SER] B8:79 [G] 4.02 0.0
Bh:42 [SER] B8:82 [A] 2.74 base:BB 0.0
Bh:43 [LYS] B8:82 [A] 4.67 0.0
Bh:44 [LEU] B8:49 [G] 3.3 B8:76 [C] 0.0
Bh:45 [SER] B8:49 [G] 4.49 B8:76 [C] 0.0
Bh:45 [SER] B8:77 [A] 3.43 0.0
Bh:45 [SER] B8:78 [G] 3.2 0.0
Bh:45 [SER] B8:82 [A] 3.34 0.0
Bh:46 [LYS] B8:82 [A] 3.69 0.0
Bh:47 [ILE] B8:49 [G] 4.07 B8:76 [C] 0.0
Bh:48 [ARG] B8:48 [A] 3.49 0.0
Bh:48 [ARG] B8:49 [G] 2.91 B8:76 [C] base:SC 0.0
Bh:49 [VAL] B8:82 [A] 3.51 0.0
Bh:51 [ARG] B8:47 [C] 4.0 B8:56 [G] 0.0
Bh:51 [ARG] B8:48 [A] 4.18 0.0
Bh:51 [ARG] B8:49 [G] 3.51 B8:76 [C] 0.0
Bh:51 [ARG] B8:61 [A] 3.77 0.0
Bh:51 [ARG] B8:62 [A] 3.19 B8:55 [PSU] 0.0
Bh:52 [LYS] B8:61 [A] 3.0 0.0
Bh:52 [LYS] B8:62 [A] 2.48 B8:55 [PSU] 0.0
Bh:52 [LYS] B8:63 [U] 2.51 sugar:SC 0.0
Bh:52 [LYS] B8:64 [U] 4.2 B8:95 [A] 0.0
Bh:54 [ILE] B8:60 [G] 4.53 B8:96 [C] 0.0
Bh:55 [ALA] B8:60 [G] 3.48 B8:96 [C] 0.0
Bh:55 [ALA] B8:61 [A] 4.38 0.0
Bh:55 [ALA] B8:64 [U] 3.43 B8:95 [A] 0.0
Bh:56 [ARG] B8:64 [U] 3.23 B8:95 [A] 0.0
Bh:56 [ARG] B8:65 [A] 3.19 B8:93 [C] 0.0
Bh:58 [LEU] B8:60 [G] 3.38 B8:96 [C] 0.0
Bh:59 [THR] B8:60 [G] 3.22 B8:96 [C] 0.0
Bh:59 [THR] B8:64 [U] 2.94 B8:95 [A] sugar:SC 0.0
Bh:59 [THR] B8:65 [A] 3.7 B8:93 [C] 0.0
Bh:59 [THR] B8:95 [A] 4.8 B8:64 [U] 0.0
Bh:59 [THR] B8:96 [C] 4.2 B8:60 [G] 0.0
Bh:62 [ASN] B8:60 [G] 2.52 B8:96 [C] base:SC, base:SC 0.0
Bh:62 [ASN] B8:96 [C] 3.25 B8:60 [G] 0.0
Bh:62 [ASN] B8:97 [A] 3.55 0.0
Bh:63 [GLN] B8:65 [A] 3.52 B8:93 [C] sugar:SC 0.0
Bh:63 [GLN] B8:95 [A] 2.87 B8:64 [U] base:SC 0.0
Bh:63 [GLN] B8:96 [C] 3.37 B8:60 [G] sugar:SC 0.0
Bh:66 [LYS] B8:96 [C] 3.19 B8:60 [G] 0.0
Bh:66 [LYS] B8:97 [A] 3.56 0.0
Bh:70 [ARG] B8:95 [A] 4.91 B8:64 [U] 0.0
Bh:70 [ARG] B8:96 [C] 2.99 B8:60 [G] 0.0
Bh:81 [LEU] B8:38 [U] 3.25 0.0
Bh:84 [ARG] B8:38 [U] 3.59 0.0
Bh:85 [PRO] B8:38 [U] 3.17 base:BB 0.0
Bh:86 [LYS] B8:36 [G] 4.54 0.0
Bh:86 [LYS] B8:37 [A] 3.91 B8:105 [C] 0.0
Bh:86 [LYS] B8:38 [U] 2.72 sugar:SC 0.0
Bh:86 [LYS] B8:39 [G] 3.28 B8:103 [A] 0.0
Bh:87 [LYS] B8:36 [G] 4.35 0.0
Bh:88 [THR] B8:34 [U] 4.38 0.0
Bh:88 [THR] B8:35 [C] 4.16 0.0
Bh:88 [THR] B8:36 [G] 3.3 0.0
Bh:89 [ARG] B8:36 [G] 2.92 base/AA stacks 0.0
Bh:89 [ARG] B8:37 [A] 3.05 B8:105 [C] 0.0
Bh:90 [ALA] B8:35 [C] 3.9 0.0
Bh:90 [ALA] B8:36 [G] 4.56 0.0
Bh:92 [ARG] B8:37 [A] 3.06 B8:105 [C] 0.0
Bh:92 [ARG] B8:38 [U] 3.43 base/AA stacks 0.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group117 7O7Y_Bh_B8 Bh: Ul29, Oryctolagus cuniculus (natural) B8: 5.8s rRNA, Oryctolagus cuniculus (natural) G1SIT5 Ribosomal protein L29 (L29p) 5.8S ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_V_0 7O7Y_Bh_B8 0.59 0.63 2.19 0.33 Ribosomal protein L29 (L29p) compare
1YHQ_V_0 7O7Y_Bh_B8 0.59 0.63 2.24 0.29 Ribosomal protein L29 (L29p) compare
4Y4O_12_1A 7O7Y_Bh_B8 0.60 0.67 2.56 0.29 Ribosomal protein L29 (L29p) compare
7O7Y_Bh_B8 7RYG_X_A 0.60 0.65 2.11 0.12 Ribosomal protein L29 (L29p) compare
6S0Z_W_A 7O7Y_Bh_B8 0.63 0.7 1.77 0.2 Ribosomal protein L29 (L29p) compare
6AZ3_a_7 7O7Y_Bh_B8 0.82 0.94 0.94 0.5 Ribosomal protein L29 (L29p) 5.8S ribosomal RNA compare