Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 7RYG_X
|
7RYG_A
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| X:3 [THR] | A:84 [U] | 3.73 | A:116 [A] | 22.79 | ||
| X:3 [THR] | A:85 [C] | 3.92 | A:115 [G] | 22.79 | ||
| X:7 [ARG] | A:84 [U] | 3.02 | A:116 [A] | sugar:SC | 85.65 | |
| X:7 [ARG] | A:85 [C] | 2.96 | A:115 [G] | 85.65 | ||
| X:32 [LYS] | A:68 [A] | 4.31 | A:101 [U] | 35.2 | ||
| X:38 [GLY] | A:103 [U] | 4.71 | A:94 [C] | 60.49 | ||
| X:39 [LYS] | A:103 [U] | 4.76 | A:94 [C] | 73.8 | ||
| X:39 [LYS] | A:104 [C] | 4.42 | A:93 [G] | 73.8 | ||
| X:40 [SER] | A:103 [U] | 4.37 | A:94 [C] | 51.12 | ||
| X:41 [HIS] | A:104 [C] | 4.71 | A:93 [G] | 72.13 | ||
| X:41 [HIS] | A:105 [C] | 4.92 | A:92 [G] | 72.13 | ||
| X:44 [GLN] | A:68 [A] | 4.54 | A:101 [U] | 51.76 | ||
| X:47 [ARG] | A:66 [U] | 3.66 | A:75 [G] | sugar:SC | 87.74 | |
| X:47 [ARG] | A:67 [G] | 3.9 | 87.74 | |||
| X:47 [ARG] | A:80 [A] | 3.51 | 87.74 | |||
| X:47 [ARG] | A:81 [A] | 2.79 | A:74 [U] | 87.74 | ||
| X:48 [LYS] | A:80 [A] | 4.89 | 75.62 | |||
| X:48 [LYS] | A:82 [G] | 3.36 | A:118 [A] | 75.62 | ||
| X:48 [LYS] | A:83 [C] | 2.98 | A:117 [G] | 75.62 | ||
| X:50 [ILE] | A:79 [A] | 4.76 | 87.92 | |||
| X:51 [ALA] | A:79 [A] | 3.64 | 99.0 | |||
| X:51 [ALA] | A:80 [A] | 3.96 | 99.0 | |||
| X:51 [ALA] | A:83 [C] | 4.0 | A:117 [G] | 99.0 | ||
| X:52 [ARG] | A:83 [C] | 3.5 | A:117 [G] | 92.74 | ||
| X:52 [ARG] | A:84 [U] | 2.96 | A:116 [A] | 92.74 | ||
| X:54 [LYS] | A:79 [A] | 3.03 | 53.1 | |||
| X:55 [THR] | A:79 [A] | 2.97 | 99.0 | |||
| X:55 [THR] | A:83 [C] | 2.87 | A:117 [G] | sugar:SC | 99.0 | |
| X:55 [THR] | A:84 [U] | 3.71 | A:116 [A] | 99.0 | ||
| X:55 [THR] | A:117 [G] | 4.35 | A:83 [C] | 99.0 | ||
| X:58 [THR] | A:79 [A] | 3.24 | base:SC | 54.3 | ||
| X:58 [THR] | A:118 [A] | 3.52 | A:82 [G] | 54.3 | ||
| X:58 [THR] | A:119 [U] | 4.97 | 54.3 | |||
| X:59 [GLU] | A:84 [U] | 3.78 | A:116 [A] | sugar:SC | 75.45 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group117 | 7RYG_X_A | X: 50s ribosomal protein l29, Acinetobacter baumannii (strain ab0057) (natural) A: 23s ribosomal RNA, Acinetobacter baumannii ab0057 (natural) | B7IA31 | Ribosomal protein L29 (L29p) | Bacterial large subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 6
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 1YHQ_V_0 | 7RYG_X_A | 0.46 | 0.92 | 3.85 | 0.41 | Ribosomal protein L29 (L29p) | compare | |
| 6S0Z_W_A | 7RYG_X_A | 0.86 | 0.98 | 2.21 | 0.53 | Ribosomal protein L29 (L29p) | Bacterial large subunit ribosomal RNA | compare |
| 6AZ3_a_7 | 7RYG_X_A | 0.67 | 0.63 | 1.87 | 0.31 | Ribosomal protein L29 (L29p) | compare | |
| 7O7Y_Bh_B8 | 7RYG_X_A | 0.60 | 0.65 | 2.11 | 0.12 | Ribosomal protein L29 (L29p) | compare | |
| 4Y4O_12_1A | 7RYG_X_A | 0.59 | 0.96 | 3.18 | 0.35 | Ribosomal protein L29 (L29p) | Bacterial large subunit ribosomal RNA | compare |
| 1VQ8_V_0 | 7RYG_X_A | 0.42 | 0.92 | 3.91 | 0.41 | Ribosomal protein L29 (L29p) | compare |