Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
7O7Y_Aw
|
7O7Y_A2
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
---|---|---|---|---|---|---|
Aw:2 [GLY] | A2:666 [G] | 4.94 | A2:1163 [C] | 59.7 | ||
Aw:2 [GLY] | A2:672 [A] | 4.23 | A2:1162 [U] | 59.7 | ||
Aw:2 [GLY] | A2:1090 [G] | 3.28 | A2:1161 [U] | base:BB | 59.7 | |
Aw:2 [GLY] | A2:1161 [U] | 3.11 | A2:1090 [G] | base:BB | 59.7 | |
Aw:2 [GLY] | A2:1162 [U] | 2.84 | A2:672 [A] | base:BB | 59.7 | |
Aw:2 [GLY] | A2:1163 [C] | 4.0 | A2:666 [G] | 59.7 | ||
Aw:3 [LYS] | A2:660 [G] | 3.38 | A2:1166 [G] | sugar:SC | 76.62 | |
Aw:3 [LYS] | A2:661 [C] | 3.31 | 76.62 | |||
Aw:3 [LYS] | A2:662 [U] | 2.92 | A2:421 [G] | 76.62 | ||
Aw:3 [LYS] | A2:663 [G] | 3.92 | A2:420 [G] | 76.62 | ||
Aw:3 [LYS] | A2:664 [C] | 2.68 | A2:1165 [G] | 76.62 | ||
Aw:3 [LYS] | A2:1161 [U] | 3.85 | A2:1090 [G] | 76.62 | ||
Aw:4 [CYS] | A2:682 [PSU] | 4.77 | A2:1025 [A] | 11.49 | ||
Aw:4 [CYS] | A2:1161 [U] | 3.54 | A2:1090 [G] | 11.49 | ||
Aw:4 [CYS] | A2:1162 [U] | 3.29 | A2:672 [A] | 11.49 | ||
Aw:5 [ARG] | A2:661 [C] | 4.9 | 28.41 | |||
Aw:5 [ARG] | A2:662 [U] | 3.05 | A2:421 [G] | 28.41 | ||
Aw:5 [ARG] | A2:1158 [G] | 3.18 | 28.41 | |||
Aw:5 [ARG] | A2:1159 [G] | 4.57 | A2:1092 [C] | 28.41 | ||
Aw:5 [ARG] | A2:1160 [G] | 3.29 | A2:1091 [C] | 28.41 | ||
Aw:5 [ARG] | A2:1161 [U] | 2.85 | A2:1090 [G] | 28.41 | ||
Aw:6 [GLY] | A2:682 [PSU] | 4.29 | A2:1025 [A] | 76.94 | ||
Aw:6 [GLY] | A2:683 [U] | 3.54 | A2:1024 [A] | 76.94 | ||
Aw:6 [GLY] | A2:1160 [G] | 4.86 | A2:1091 [C] | 76.94 | ||
Aw:6 [GLY] | A2:1161 [U] | 3.17 | A2:1090 [G] | 76.94 | ||
Aw:7 [LEU] | A2:682 [PSU] | 4.89 | A2:1025 [A] | 34.4 | ||
Aw:7 [LEU] | A2:683 [U] | 3.17 | A2:1024 [A] | 34.4 | ||
Aw:8 [ARG] | A2:682 [PSU] | 3.15 | A2:1025 [A] | 9.91 | ||
Aw:8 [ARG] | A2:683 [U] | 2.85 | A2:1024 [A] | 9.91 | ||
Aw:8 [ARG] | A2:684 [OMG] | 4.44 | 9.91 | |||
Aw:9 [THR] | A2:682 [PSU] | 3.34 | A2:1025 [A] | 67.81 | ||
Aw:9 [THR] | A2:683 [U] | 4.7 | A2:1024 [A] | 67.81 | ||
Aw:9 [THR] | A2:1161 [U] | 3.81 | A2:1090 [G] | 67.81 | ||
Aw:11 [ARG] | A2:400 [C] | 3.31 | 64.88 | |||
Aw:11 [ARG] | A2:401 [C] | 4.22 | A2:364 [A] | 64.88 | ||
Aw:12 [LYS] | A2:1162 [U] | 3.75 | A2:672 [A] | 58.39 | ||
Aw:12 [LYS] | A2:1163 [C] | 2.73 | A2:666 [G] | 58.39 | ||
Aw:13 [LEU] | A2:661 [C] | 4.24 | 78.78 | |||
Aw:14 [ARG] | A2:358 [C] | 3.56 | A2:406 [G] | 8.65 | ||
Aw:16 [HIS] | A2:1164 [C] | 3.43 | A2:665 [A] | 38.6 | ||
Aw:17 [ARG] | A2:659 [U] | 3.22 | 66.88 | |||
Aw:17 [ARG] | A2:660 [G] | 3.17 | A2:1166 [G] | base:SC | 66.88 | |
Aw:17 [ARG] | A2:661 [C] | 2.9 | 66.88 | |||
Aw:17 [ARG] | A2:664 [C] | 4.74 | A2:1165 [G] | 66.88 | ||
Aw:17 [ARG] | A2:1166 [G] | 4.4 | A2:660 [G] | 66.88 | ||
Aw:18 [ARG] | A2:359 [C] | 3.24 | A2:405 [G] | 32.6 | ||
Aw:18 [ARG] | A2:360 [U] | 3.09 | A2:404 [G] | 32.6 | ||
Aw:19 [ASP] | A2:360 [U] | 4.54 | A2:404 [G] | 4.08 | ||
Aw:20 [GLN] | A2:659 [U] | 2.92 | base:BB | 8.07 | ||
Aw:20 [GLN] | A2:1165 [G] | 3.61 | A2:664 [C] | 8.07 | ||
Aw:20 [GLN] | A2:1166 [G] | 2.68 | A2:660 [G] | base:SC | 8.07 | |
Aw:21 [LYS] | A2:423 [U] | 4.69 | A2:416 [A] | 67.3 | ||
Aw:21 [LYS] | A2:424 [U] | 4.64 | A2:415 [A] | 67.3 | ||
Aw:21 [LYS] | A2:659 [U] | 3.61 | 67.3 | |||
Aw:22 [TRP] | A2:359 [C] | 3.23 | A2:405 [G] | 5.87 | ||
Aw:22 [TRP] | A2:360 [U] | 2.64 | A2:404 [G] | 5.87 | ||
Aw:23 [HIS] | A2:659 [U] | 3.42 | 27.55 | |||
Aw:23 [HIS] | A2:1165 [G] | 4.0 | A2:664 [C] | 27.55 | ||
Aw:23 [HIS] | A2:1166 [G] | 3.09 | A2:660 [G] | sugar:BB | 27.55 | |
Aw:23 [HIS] | A2:1167 [G] | 4.73 | A2:1194 [U] | 27.55 | ||
Aw:24 [ASP] | A2:658 [U] | 4.23 | 25.4 | |||
Aw:24 [ASP] | A2:659 [U] | 3.35 | 25.4 | |||
Aw:24 [ASP] | A2:1166 [G] | 3.84 | A2:660 [G] | 25.4 | ||
Aw:25 [LYS] | A2:1166 [G] | 4.56 | A2:660 [G] | 24.38 | ||
Aw:25 [LYS] | A2:1167 [G] | 2.98 | A2:1194 [U] | base:SC | 24.38 | |
Aw:25 [LYS] | A2:1168 [G] | 3.98 | A2:1193 [U] | base:SC | 24.38 | |
Aw:25 [LYS] | A2:1193 [U] | 4.48 | A2:1168 [G] | 24.38 | ||
Aw:25 [LYS] | A2:1194 [U] | 4.8 | A2:1167 [G] | 24.38 | ||
Aw:26 [GLN] | A2:18 [C] | 3.53 | A2:6 [G] | 0.03 | ||
Aw:27 [TYR] | A2:359 [C] | 4.55 | A2:405 [G] | 32.72 | ||
Aw:27 [TYR] | A2:424 [U] | 4.86 | A2:415 [A] | 32.72 | ||
Aw:28 [LYS] | A2:1189 [A] | 3.26 | A2:1173 [U] | 16.98 | ||
Aw:28 [LYS] | A2:1190 [A] | 3.13 | A2:1171 [A] | 16.98 | ||
Aw:29 [LYS] | A2:651 [A] | 4.11 | A2:24 [C] | 25.53 | ||
Aw:30 [ALA] | A2:652 [PSU] | 3.65 | A2:23 [G] | 42.65 | ||
Aw:31 [HIS] | A2:424 [U] | 4.78 | A2:415 [A] | 41.24 | ||
Aw:32 [LEU] | A2:1189 [A] | 4.7 | A2:1173 [U] | 13.45 | ||
Aw:32 [LEU] | A2:1190 [A] | 3.62 | A2:1171 [A] | 13.45 | ||
Aw:34 [THR] | A2:1190 [A] | 3.04 | A2:1171 [A] | 23.89 | ||
Aw:34 [THR] | A2:1191 [A] | 3.7 | A2:1170 [G] | 23.89 | ||
Aw:35 [ALA] | A2:1190 [A] | 4.9 | A2:1171 [A] | 9.37 | ||
Aw:35 [ALA] | A2:1191 [A] | 3.67 | A2:1170 [G] | 9.37 | ||
Aw:36 [LEU] | A2:408 [G] | 3.42 | 4.52 | |||
Aw:37 [LYS] | A2:408 [G] | 4.41 | 42.52 | |||
Aw:37 [LYS] | A2:1811 [U] | 3.48 | A2:1725 [A] | 42.52 | ||
Aw:37 [LYS] | A2:1812 [C] | 2.47 | A2:1724 [G] | 42.52 | ||
Aw:38 [ALA] | A2:1191 [A] | 3.67 | A2:1170 [G] | 3.7 | ||
Aw:38 [ALA] | A2:1192 [C] | 4.04 | A2:1169 [G] | 3.7 | ||
Aw:42 [GLY] | A2:408 [G] | 3.76 | base:BB | 7.84 | ||
Aw:43 [GLY] | A2:650 [PSU] | 3.86 | A2:25 [A] | 69.02 | ||
Aw:44 [ALA] | A2:484 [C] | 3.69 | 51.87 | |||
Aw:44 [ALA] | A2:650 [PSU] | 4.79 | A2:25 [A] | 51.87 | ||
Aw:45 [SER] | A2:26 [U] | 4.42 | A2:649 [A] | 75.88 | ||
Aw:45 [SER] | A2:27 [A2M] | 4.33 | A2:648 [U] | 75.88 | ||
Aw:45 [SER] | A2:484 [C] | 4.18 | 75.88 | |||
Aw:45 [SER] | A2:649 [A] | 2.84 | A2:26 [U] | sugar:BB | 75.88 | |
Aw:45 [SER] | A2:650 [PSU] | 3.61 | A2:25 [A] | 75.88 | ||
Aw:46 [HIS] | A2:27 [A2M] | 3.33 | A2:648 [U] | 66.81 | ||
Aw:46 [HIS] | A2:28 [U] | 4.77 | A2:647 [G] | 66.81 | ||
Aw:46 [HIS] | A2:484 [C] | 3.42 | 66.81 | |||
Aw:46 [HIS] | A2:648 [U] | 4.8 | A2:27 [A2M] | 66.81 | ||
Aw:46 [HIS] | A2:649 [A] | 3.42 | A2:26 [U] | 66.81 | ||
Aw:47 [ALA] | A2:484 [C] | 3.2 | 57.76 | |||
Aw:48 [LYS] | A2:484 [C] | 3.1 | 47.0 | |||
Aw:48 [LYS] | A2:485 [A2M] | 3.73 | 47.0 | |||
Aw:60 [LYS] | A2:1193 [U] | 4.87 | A2:1168 [G] | 70.66 | ||
Aw:60 [LYS] | A2:1194 [U] | 2.45 | A2:1167 [G] | 70.66 | ||
Aw:60 [LYS] | A2:1195 [A] | 4.82 | 70.66 | |||
Aw:61 [GLN] | A2:1825 [A] | 2.8 | 86.82 | |||
Aw:62 [HY3] | A2:615 [C] | 3.91 | 0.0 | |||
Aw:62 [HY3] | A2:626 [G] | 4.41 | 0.0 | |||
Aw:63 [ASN] | A2:615 [C] | 4.43 | 96.29 | |||
Aw:63 [ASN] | A2:619 [C] | 4.2 | A2:624 [G] | 96.29 | ||
Aw:63 [ASN] | A2:620 [A] | 4.76 | 96.29 | |||
Aw:63 [ASN] | A2:624 [G] | 2.85 | A2:619 [C] | base:SC | 96.29 | |
Aw:63 [ASN] | A2:625 [C] | 2.99 | A2:618 [G] | base:SC | 96.29 | |
Aw:63 [ASN] | A2:626 [G] | 3.2 | A2:617 [A] | base:SC | 96.29 | |
Aw:64 [SER] | A2:615 [C] | 2.56 | base:SC, sugar:SC | 98.72 | ||
Aw:64 [SER] | A2:616 [C] | 3.61 | 98.72 | |||
Aw:64 [SER] | A2:617 [A] | 4.86 | A2:626 [G] | 98.72 | ||
Aw:64 [SER] | A2:626 [G] | 3.13 | A2:617 [A] | base:BB, base:BB | 98.72 | |
Aw:64 [SER] | A2:627 [G] | 4.65 | 98.72 | |||
Aw:65 [ALA] | A2:616 [C] | 4.54 | 82.64 | |||
Aw:65 [ALA] | A2:617 [A] | 3.49 | A2:626 [G] | 82.64 | ||
Aw:65 [ALA] | A2:618 [G] | 3.89 | A2:625 [C] | 82.64 | ||
Aw:65 [ALA] | A2:626 [G] | 4.24 | A2:617 [A] | 82.64 | ||
Aw:66 [ILE] | A2:617 [A] | 3.15 | A2:626 [G] | 40.28 | ||
Aw:66 [ILE] | A2:618 [G] | 3.87 | A2:625 [C] | 40.28 | ||
Aw:67 [ARG] | A2:618 [G] | 2.91 | A2:625 [C] | base:SC, base:SC | 88.28 | |
Aw:67 [ARG] | A2:619 [C] | 2.94 | A2:624 [G] | base:SC | 88.28 | |
Aw:67 [ARG] | A2:620 [A] | 4.05 | 88.28 | |||
Aw:67 [ARG] | A2:625 [C] | 4.75 | A2:618 [G] | 88.28 | ||
Aw:68 [LYS] | A2:616 [C] | 4.98 | 75.35 | |||
Aw:68 [LYS] | A2:617 [A] | 2.71 | A2:626 [G] | 75.35 | ||
Aw:68 [LYS] | A2:618 [G] | 3.11 | A2:625 [C] | 75.35 | ||
Aw:75 [ILE] | A2:483 [G] | 3.97 | A2:44 [U] | 54.35 | ||
Aw:76 [LYS] | A2:483 [G] | 3.41 | A2:44 [U] | 74.16 | ||
Aw:76 [LYS] | A2:484 [C] | 3.79 | 74.16 | |||
Aw:84 [PHE] | A2:619 [C] | 3.44 | A2:624 [G] | 63.51 | ||
Aw:86 [PRO] | A2:619 [C] | 3.6 | A2:624 [G] | 73.93 | ||
Aw:87 [ASN] | A2:618 [G] | 3.71 | A2:625 [C] | 58.36 | ||
Aw:87 [ASN] | A2:619 [C] | 2.56 | A2:624 [G] | 58.36 | ||
Aw:87 [ASN] | A2:634 [C] | 4.88 | A2:611 [G] | 58.36 | ||
Aw:88 [ASP] | A2:617 [A] | 2.57 | A2:626 [G] | sugar:SC, sugar:SC | 51.12 | |
Aw:88 [ASP] | A2:618 [G] | 3.08 | A2:625 [C] | 51.12 | ||
Aw:88 [ASP] | A2:619 [C] | 4.86 | A2:624 [G] | 51.12 | ||
Aw:88 [ASP] | A2:634 [C] | 4.32 | A2:611 [G] | 51.12 | ||
Aw:89 [GLY] | A2:617 [A] | 4.67 | A2:626 [G] | 57.88 | ||
Aw:89 [GLY] | A2:618 [G] | 3.44 | A2:625 [C] | 57.88 | ||
Aw:101 [LEU] | A2:28 [U] | 4.45 | A2:647 [G] | 62.97 | ||
Aw:101 [LEU] | A2:484 [C] | 3.93 | 62.97 | |||
Aw:103 [ALA] | A2:649 [A] | 3.73 | A2:26 [U] | 71.91 | ||
Aw:104 [GLY] | A2:649 [A] | 3.08 | A2:26 [U] | sugar:BB | 82.38 | |
Aw:104 [GLY] | A2:650 [PSU] | 4.11 | A2:25 [A] | 82.38 | ||
Aw:105 [PHE] | A2:649 [A] | 4.18 | A2:26 [U] | 57.97 | ||
Aw:105 [PHE] | A2:650 [PSU] | 4.13 | A2:25 [A] | 57.97 | ||
Aw:106 [GLY] | A2:20 [G] | 4.74 | A2:4 [C] | 81.86 | ||
Aw:106 [GLY] | A2:621 [G] | 4.61 | A2:603 [G] | 81.86 | ||
Aw:106 [GLY] | A2:649 [A] | 3.2 | A2:26 [U] | 81.86 | ||
Aw:106 [GLY] | A2:650 [PSU] | 3.27 | A2:25 [A] | 81.86 | ||
Aw:107 [ARG] | A2:18 [C] | 3.01 | A2:6 [G] | 64.23 | ||
Aw:107 [ARG] | A2:19 [A] | 3.29 | A2:5 [U] | 64.23 | ||
Aw:107 [ARG] | A2:621 [G] | 3.27 | A2:603 [G] | 64.23 | ||
Aw:107 [ARG] | A2:622 [C] | 3.46 | A2:602 [OMG] | 64.23 | ||
Aw:107 [ARG] | A2:650 [PSU] | 3.44 | A2:25 [A] | 64.23 | ||
Aw:108 [LYS] | A2:650 [PSU] | 2.83 | A2:25 [A] | 41.49 | ||
Aw:108 [LYS] | A2:651 [A] | 3.13 | A2:24 [C] | 41.49 | ||
Aw:109 [GLY] | A2:650 [PSU] | 4.45 | A2:25 [A] | 68.93 | ||
Aw:110 [HIS] | A2:1194 [U] | 3.55 | A2:1167 [G] | 65.86 | ||
Aw:110 [HIS] | A2:1195 [A] | 4.81 | 65.86 | |||
Aw:111 [ALA] | A2:622 [C] | 4.6 | A2:602 [OMG] | 69.01 | ||
Aw:111 [ALA] | A2:1194 [U] | 4.24 | A2:1167 [G] | 69.01 | ||
Aw:112 [VAL] | A2:621 [G] | 3.66 | A2:603 [G] | 39.59 | ||
Aw:112 [VAL] | A2:622 [C] | 3.73 | A2:602 [OMG] | 39.59 | ||
Aw:113 [GLY] | A2:620 [A] | 3.46 | 68.96 | |||
Aw:113 [GLY] | A2:621 [G] | 4.64 | A2:603 [G] | 68.96 | ||
Aw:113 [GLY] | A2:622 [C] | 2.8 | A2:602 [OMG] | 68.96 | ||
Aw:114 [ASP] | A2:619 [C] | 3.21 | A2:624 [G] | base:SC | 99.0 | |
Aw:114 [ASP] | A2:620 [A] | 2.92 | base:BB | base/AA stacks | 99.0 | |
Aw:114 [ASP] | A2:624 [G] | 3.36 | A2:619 [C] | 99.0 | ||
Aw:114 [ASP] | A2:625 [C] | 4.64 | A2:618 [G] | 99.0 | ||
Aw:115 [ILE] | A2:620 [A] | 3.73 | 70.87 | |||
Aw:117 [GLY] | A2:1193 [U] | 4.1 | A2:1168 [G] | 93.31 | ||
Aw:117 [GLY] | A2:1194 [U] | 4.86 | A2:1167 [G] | 93.31 | ||
Aw:119 [ARG] | A2:1192 [C] | 4.82 | A2:1169 [G] | 73.52 | ||
Aw:119 [ARG] | A2:1193 [U] | 2.74 | A2:1168 [G] | 73.52 | ||
Aw:119 [ARG] | A2:1194 [U] | 4.95 | A2:1167 [G] | 73.52 | ||
Aw:121 [LYS] | A2:648 [U] | 2.92 | A2:27 [A2M] | sugar:SC | 60.71 | |
Aw:121 [LYS] | A2:649 [A] | 3.91 | A2:26 [U] | 60.71 | ||
Aw:123 [VAL] | A2:28 [U] | 4.0 | A2:647 [G] | 70.01 | ||
Aw:124 [LYS] | A2:28 [U] | 3.72 | A2:647 [G] | 83.71 | ||
Aw:124 [LYS] | A2:29 [G] | 2.9 | A2:646 [C] | 83.71 | ||
Aw:129 [SER] | A2:29 [G] | 3.15 | A2:646 [C] | 72.17 | ||
Aw:129 [SER] | A2:30 [C] | 3.78 | A2:645 [OMG] | 72.17 | ||
Aw:131 [LEU] | A2:29 [G] | 4.07 | A2:646 [C] | 0.0 | ||
Aw:131 [LEU] | A2:598 [G] | 3.37 | A2:640 [C] | 0.0 | ||
Aw:132 [ALA] | A2:29 [G] | 4.84 | A2:646 [C] | 63.86 | ||
Aw:132 [ALA] | A2:30 [C] | 3.85 | A2:645 [OMG] | 63.86 | ||
Aw:134 [TYR] | A2:634 [C] | 3.84 | A2:611 [G] | 5.51 | ||
Aw:134 [TYR] | A2:635 [A] | 3.79 | A2:610 [PSU] | 5.51 | ||
Aw:135 [LYS] | A2:598 [G] | 3.54 | A2:640 [C] | 45.33 | ||
Aw:137 [LYS] | A2:30 [C] | 3.37 | A2:645 [OMG] | 75.73 | ||
Aw:137 [LYS] | A2:31 [U] | 3.22 | A2:517 [A] | 75.73 | ||
Aw:137 [LYS] | A2:597 [U] | 3.9 | A2:641 [A] | 75.73 | ||
Aw:138 [LYS] | A2:30 [C] | 3.37 | A2:645 [OMG] | 58.15 |
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
---|---|---|---|---|---|---|---|
group118 | 7O7Y_Aw_A2 | Aw: 40s ribosomal protein s23, Oryctolagus cuniculus (natural) A2: 18s rRNA, Oryctolagus cuniculus (natural) | G1SZ47 | Nucleic acid-binding proteins | Eukaryotic small subunit ribosomal RNA | ✔ |
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Interologs
Total number of interologs for this interface: 5
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
2VQE_L_A | 7O7Y_Aw_A2 | 0.33 | 0.92 | 4.13 | 0.12 | Nucleic acid-binding proteins | compare | |
4W2F_AL_AA | 7O7Y_Aw_A2 | 0.34 | 0.93 | 4.24 | 0.12 | Nucleic acid-binding proteins | compare | |
4Y4O_1l_1a | 7O7Y_Aw_A2 | 0.34 | 0.93 | 4.24 | 0.12 | Nucleic acid-binding proteins | compare | |
6S0X_l_a | 7O7Y_Aw_A2 | 0.41 | 0.89 | 4.85 | 0.08 | Nucleic acid-binding proteins | compare | |
7K00_L_A | 7O7Y_Aw_A2 | 0.31 | 0.91 | 4.35 | 0.08 | Nucleic acid-binding proteins | compare |