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All interfaces > All interologs > Interface groups > group119 > 4W2F_B0_AX,BA

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Licorice
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Licorice
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Chain
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Hydrophobicity
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Conservation*

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4W2F_B0
4W2F_AX,BA
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
B0:2 [ALA] AX:76 [A] 3.36 base:BB 90.17
B0:2 [ALA] BA:2539 [A] 3.32 BA:2159 [G] 90.17
B0:2 [ALA] BA:2540 [C] 3.74 BA:2592 [U] 90.17
B0:2 [ALA] BA:2582 [G] 3.75 BA:2545 [U] 90.17
B0:2 [ALA] BA:2690 [A] 4.11 90.17
B0:3 [HIS] BA:2581 [U] 4.35 BA:2547 [A] 67.74
B0:3 [HIS] BA:2582 [G] 2.81 BA:2545 [U] 67.74
B0:3 [HIS] BA:2690 [A] 4.53 67.74
B0:4 [LYS] AX:74 [C] 3.9 BA:2340 [G] 81.08
B0:4 [LYS] AX:75 [C] 4.64 BA:2339 [G] 81.08
B0:4 [LYS] AX:76 [A] 4.96 81.08
B0:4 [LYS] BA:2339 [G] 3.44 AX:75 [C] 81.08
B0:4 [LYS] BA:2340 [G] 3.05 AX:74 [C] base:SC, base:SC 81.08
B0:4 [LYS] BA:2341 [G] 3.46 81.08
B0:6 [GLY] AX:2 [G] 4.19 AX:71 [C] 70.36
B0:7 [LEU] AX:2 [G] 3.43 AX:71 [C] 42.83
B0:8 [GLY] AX:2 [G] 4.03 AX:71 [C] 73.11
B0:8 [GLY] AX:3 [C] 4.17 AX:70 [G] 73.11
B0:8 [GLY] BA:2343 [G] 3.14 BA:2363 [C] base:BB 73.11
B0:8 [GLY] BA:2363 [C] 4.67 BA:2343 [G] 73.11
B0:9 [SER] AX:3 [C] 3.81 AX:70 [G] 70.16
B0:9 [SER] BA:2343 [G] 3.83 BA:2363 [C] 70.16
B0:9 [SER] BA:2344 [G] 3.7 BA:2336 [C] 70.16
B0:10 [THR] BA:2344 [G] 3.92 BA:2336 [C] sugar:BB 65.5
B0:10 [THR] BA:2363 [C] 4.64 BA:2343 [G] 65.5
B0:10 [THR] BA:2364 [G] 4.7 BA:2352 [C] 65.5
B0:10 [THR] BA:2365 [G] 2.8 BA:2351 [C] 65.5
B0:11 [ARG] AX:63 [G] 3.54 AX:51 [C] 64.14
B0:11 [ARG] AX:64 [G] 3.15 AX:50 [U] 64.14
B0:11 [ARG] BA:2367 [G] 3.68 BA:2349 [C] 64.14
B0:12 [ASN] BA:2365 [G] 3.19 BA:2351 [C] 84.25
B0:12 [ASN] BA:2366 [A] 2.63 BA:2350 [U] 84.25
B0:12 [ASN] BA:2367 [G] 4.21 BA:2349 [C] 84.25
B0:14 [ARG] BA:2346 [C] 4.46 BA:2334 [G] 50.52
B0:14 [ARG] BA:2348 [C] 3.71 BA:2368 [G] 50.52
B0:14 [ARG] BA:2349 [C] 3.75 BA:2367 [G] 50.52
B0:14 [ARG] BA:2350 [U] 3.98 BA:2366 [A] 50.52
B0:14 [ARG] BA:2351 [C] 3.92 BA:2365 [G] base:BB 50.52
B0:14 [ARG] BA:2365 [G] 3.6 BA:2351 [C] 50.52
B0:14 [ARG] BA:2366 [A] 3.28 BA:2350 [U] 50.52
B0:14 [ARG] BA:2367 [G] 2.87 BA:2349 [C] base:SC 50.52
B0:14 [ARG] BA:2368 [G] 3.19 BA:2348 [C] 50.52
B0:15 [ASP] BA:2349 [C] 4.36 BA:2367 [G] 66.85
B0:15 [ASP] BA:2350 [U] 3.6 BA:2366 [A] 66.85
B0:15 [ASP] BA:2351 [C] 2.76 BA:2365 [G] base:SC 66.85
B0:15 [ASP] BA:2352 [C] 3.31 BA:2364 [G] 66.85
B0:15 [ASP] BA:2353 [U] 3.77 BA:2362 [A] 66.85
B0:15 [ASP] BA:2366 [A] 4.68 BA:2350 [U] 66.85
B0:16 [SER] BA:2349 [C] 3.45 BA:2367 [G] 69.02
B0:16 [SER] BA:2350 [U] 2.57 BA:2366 [A] 69.02
B0:16 [SER] BA:2351 [C] 4.74 BA:2365 [G] 69.02
B0:17 [GLN] BA:2348 [C] 3.44 BA:2368 [G] 27.41
B0:17 [GLN] BA:2349 [C] 2.74 BA:2367 [G] 27.41
B0:17 [GLN] BA:2350 [U] 3.34 BA:2366 [A] 27.41
B0:18 [ALA] BA:2359 [G] 3.21 61.37
B0:18 [ALA] BA:2360 [U] 3.38 BA:2355 [A] 61.37
B0:19 [LYS] BA:2349 [C] 2.73 BA:2367 [G] 77.61
B0:19 [LYS] BA:2350 [U] 2.9 BA:2366 [A] 77.61
B0:19 [LYS] BA:2359 [G] 3.59 77.61
B0:19 [LYS] BA:2475 [U] 3.66 BA:2416 [A] 77.61
B0:19 [LYS] BA:2476 [A] 4.41 77.61
B0:20 [ARG] BA:2358 [G] 3.36 58.63
B0:20 [ARG] BA:2359 [G] 2.96 58.63
B0:20 [ARG] BA:2360 [U] 4.06 BA:2355 [A] 58.63
B0:20 [ARG] BA:2444 [C] 3.18 BA:2449 [A] 58.63
B0:20 [ARG] BA:2445 [U] 2.59 58.63
B0:21 [LEU] BA:2358 [G] 3.79 68.75
B0:21 [LEU] BA:2359 [G] 4.56 68.75
B0:23 [VAL] BA:980 [C] 3.91 BA:1042 [G] 56.28
B0:24 [LYS] BA:2443 [C] 3.37 BA:2450 [G] 92.1
B0:24 [LYS] BA:2444 [C] 2.72 BA:2449 [A] 92.1
B0:25 [ARG] BA:2442 [G] 3.67 BA:2451 [C] 43.22
B0:25 [ARG] BA:2443 [C] 3.01 BA:2450 [G] 43.22
B0:26 [TYR] BA:978 [G] 3.57 BA:1044 [U] 28.63
B0:26 [TYR] BA:979 [C] 3.6 BA:1043 [G] 28.63
B0:26 [TYR] BA:980 [C] 3.35 BA:1042 [G] 28.63
B0:26 [TYR] BA:1043 [G] 3.46 BA:979 [C] 28.63
B0:26 [TYR] BA:1044 [U] 3.78 BA:978 [G] 28.63
B0:26 [TYR] BA:2357 [A] 3.93 sugar:SC 28.63
B0:27 [GLU] BA:978 [G] 2.4 BA:1044 [U] base:BB, sugar:SC 57.85
B0:27 [GLU] BA:979 [C] 3.24 BA:1043 [G] sugar:BB 57.85
B0:27 [GLU] BA:1045 [C] 4.76 BA:977 [G] 57.85
B0:28 [GLY] BA:1045 [C] 4.07 BA:977 [G] 82.75
B0:29 [GLN] BA:1044 [U] 3.18 BA:978 [G] 56.53
B0:29 [GLN] BA:1045 [C] 3.3 BA:977 [G] 56.53
B0:32 [ARG] BA:2440 [A] 4.96 BA:2453 [G] 35.51
B0:32 [ARG] BA:2441 [G] 3.5 BA:2452 [C] 35.51
B0:32 [ARG] BA:2442 [G] 4.21 BA:2451 [C] 35.51
B0:33 [ALA] BA:2440 [A] 3.45 BA:2453 [G] 57.67
B0:33 [ALA] BA:2441 [G] 3.02 BA:2452 [C] sugar:BB 57.67
B0:34 [GLY] BA:2440 [A] 3.53 BA:2453 [G] 93.06
B0:34 [GLY] BA:2441 [G] 2.47 BA:2452 [C] base:BB 93.06
B0:34 [GLY] BA:2442 [G] 4.03 BA:2451 [C] 93.06
B0:34 [GLY] BA:2452 [C] 4.94 BA:2441 [G] 93.06
B0:35 [ASN] BA:2441 [G] 2.67 BA:2452 [C] sugar:SC 50.83
B0:35 [ASN] BA:2442 [G] 3.39 BA:2451 [C] 50.83
B0:36 [ILE] BA:2441 [G] 4.31 BA:2452 [C] 88.91
B0:36 [ILE] BA:2442 [G] 2.81 BA:2451 [C] sugar:BB 88.91
B0:36 [ILE] BA:2443 [C] 3.47 BA:2450 [G] 88.91
B0:36 [ILE] BA:2452 [C] 3.89 BA:2441 [G] 88.91
B0:39 [ARG] BA:2442 [G] 3.15 BA:2451 [C] base:SC 82.99
B0:39 [ARG] BA:2443 [C] 3.13 BA:2450 [G] base:SC, sugar:SC 82.99
B0:39 [ARG] BA:2450 [G] 4.74 BA:2443 [C] 82.99
B0:39 [ARG] BA:2451 [C] 2.92 BA:2442 [G] base:SC, sugar:SC 82.99
B0:39 [ARG] BA:2452 [C] 3.59 BA:2441 [G] 82.99
B0:41 [ARG] BA:2350 [U] 4.61 BA:2366 [A] 64.06
B0:41 [ARG] BA:2417 [G] 3.92 BA:2474 [C] 64.06
B0:41 [ARG] BA:2418 [G] 2.41 BA:2473 [C] sugar:BB 64.06
B0:41 [ARG] BA:2419 [G] 3.68 BA:2412 [C] 64.06
B0:41 [ARG] BA:2474 [C] 3.96 BA:2417 [G] 64.06
B0:41 [ARG] BA:2475 [U] 3.61 BA:2416 [A] 64.06
B0:42 [GLY] BA:2418 [G] 3.5 BA:2473 [C] 74.63
B0:42 [GLY] BA:2419 [G] 3.55 BA:2412 [C] 74.63
B0:42 [GLY] BA:2424 [A] 4.83 74.63
B0:43 [THR] BA:2419 [G] 3.1 BA:2412 [C] sugar:BB 68.27
B0:43 [THR] BA:2420 [U] 3.52 BA:2411 [G] 68.27
B0:43 [THR] BA:2424 [A] 3.11 68.27
B0:44 [ARG] BA:981 [U] 4.79 BA:1041 [G] 55.83
B0:44 [ARG] BA:982 [G] 4.21 55.83
B0:44 [ARG] BA:2418 [G] 3.27 BA:2473 [C] 55.83
B0:44 [ARG] BA:2419 [G] 3.92 BA:2412 [C] 55.83
B0:45 [PHE] BA:980 [C] 3.95 BA:1042 [G] 44.39
B0:45 [PHE] BA:981 [U] 3.87 BA:1041 [G] 44.39
B0:46 [LYS] BA:2420 [U] 4.23 BA:2411 [G] 58.25
B0:53 [MET] BA:2453 [G] 4.88 BA:2440 [A] 38.2
B0:54 [GLY] BA:2452 [C] 3.4 BA:2441 [G] 75.06
B0:54 [GLY] BA:2453 [G] 3.16 BA:2440 [A] 75.06
B0:55 [ARG] BA:2452 [C] 2.69 BA:2441 [G] 58.68
B0:55 [ARG] BA:2453 [G] 2.92 BA:2440 [A] 58.68
B0:55 [ARG] BA:2471 [G] 4.41 BA:2373 [C] 58.68
B0:55 [ARG] BA:2472 [G] 2.33 BA:2372 [C] 58.68
B0:55 [ARG] BA:2473 [C] 4.69 BA:2418 [G] 58.68
B0:55 [ARG] BA:2474 [C] 3.36 BA:2417 [G] 58.68
B0:55 [ARG] BA:2475 [U] 2.74 BA:2416 [A] 58.68
B0:56 [ASP] BA:2451 [C] 3.58 BA:2442 [G] 80.31
B0:56 [ASP] BA:2452 [C] 3.2 BA:2441 [G] 80.31
B0:56 [ASP] BA:2474 [C] 4.1 BA:2417 [G] 80.31
B0:56 [ASP] BA:2475 [U] 4.92 BA:2416 [A] 80.31
B0:57 [PHE] BA:2418 [G] 3.96 BA:2473 [C] 46.3
B0:57 [PHE] BA:2419 [G] 4.55 BA:2412 [C] 46.3
B0:57 [PHE] BA:2424 [A] 3.63 46.3
B0:57 [PHE] BA:2473 [C] 3.4 BA:2418 [G] 46.3
B0:57 [PHE] BA:2474 [C] 3.39 BA:2417 [G] 46.3
B0:58 [THR] BA:2452 [C] 3.71 BA:2441 [G] 90.6
B0:60 [PHE] BA:2452 [C] 4.25 BA:2441 [G] 40.95
B0:60 [PHE] BA:2453 [G] 3.5 BA:2440 [A] 40.95
B0:60 [PHE] BA:2454 [A] 3.94 BA:2439 [G] 40.95
B0:62 [LEU] BA:2454 [A] 3.83 BA:2439 [G] 31.96
B0:69 [PHE] BA:979 [C] 3.29 BA:1043 [G] 68.47
B0:69 [PHE] BA:980 [C] 3.65 BA:1042 [G] 68.47
B0:74 [ARG] BA:2422 [G] 2.5 base:SC, base:SC, base:SC 18.13
B0:75 [LEU] BA:2422 [G] 3.38 11.51
B0:77 [ARG] BA:980 [C] 2.76 BA:1042 [G] 48.32
B0:77 [ARG] BA:981 [U] 2.97 BA:1041 [G] 48.32

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group119 4W2F_B0_AX,BA B0: 50s ribosomal protein l27, Thermus thermophilus (natural) AX: E-site tRNA, Escherichia coli (genetically engineered) BA: 23s ribosomal RNA, Thermus thermophilus (natural) P60493 Ribosomal L27 protein tRNA & Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4W2F_B0_AX,BA 7OF0_W_A 0.83 0.94 1.73 0.26 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare
4W2F_B0_AX,BA 6S0Z_U_A 0.85 0.96 0.92 0.56 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare
4W2F_B0_AX,BA 7N1P_La_23,Dt 0.90 0.95 1.41 0.56 Ribosomal L27 protein Bacterial large subunit ribosomal RNA & tRNA compare
4W2F_B0_AX,BA 7K00_v_a 0.92 0.96 0.87 0.62 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare
4W2F_B0_AX,BA 7RYG_V_A 0.94 0.96 2.3 0.65 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare
4W2F_B0_AX,BA 6XHV_10_1A,1x 0.99 0.97 0.74 0.88 Ribosomal L27 protein Bacterial large subunit ribosomal RNA & tRNA compare
4W2F_B0_AX,BA 4Y4O_10_1A 0.99 0.99 0.88 0.98 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare