RNAprotDB

All interfaces > All interologs > Interface groups > group119 > 4W2F_B0_AX,BA vs 7OF0_W_A

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

4W2F_B0
4W2F_AX,BA
7OF0_W
7OF0_A
Conserved?
B0:32 [ARG] BA:2441 [G] W:62 [HIS] A:2860 [G] ✔
B0:32 [ARG] BA:2442 [G] W:62 [HIS] A:2861 [A] ✔
B0:77 [ARG] BA:980 [C] W:129 [THR] A:2064 [A] ✔
B0:77 [ARG] BA:981 [U] W:129 [THR] A:2065 [A] ✔
B0:24 [LYS] BA:2443 [C] W:54 [LYS] A:2862 [C] ✔
B0:24 [LYS] BA:2444 [C] W:54 [LYS] A:2863 [U] ✔
B0:33 [ALA] BA:2440 [A] W:63 [ALA] A:2859 [A] ✔
B0:33 [ALA] BA:2441 [G] W:63 [ALA] A:2860 [G] ✔
B0:41 [ARG] BA:2350 [U] W:71 [ARG] A:2826 [G] ✔
B0:54 [GLY] BA:2452 [C] W:84 [GLY] A:2872 [C] ✔
B0:54 [GLY] BA:2453 [G] W:84 [GLY] A:2873 [A] ✔
B0:21 [LEU] BA:2358 [G] W:51 [GLN] A:2834 [C] ✔
B0:21 [LEU] BA:2359 [G] W:51 [GLN] A:2835 [C] ✔
B0:55 [ARG] BA:2452 [C] W:85 [LYS] A:2872 [C] ✔
B0:55 [ARG] BA:2453 [G] W:85 [LYS] A:2873 [A] ✔
B0:55 [ARG] BA:2471 [G] W:85 [LYS] A:2889 [C] ✔
B0:19 [LYS] BA:2359 [G] W:49 [ARG] A:2835 [C] ✔
B0:29 [GLN] BA:1044 [U] W:59 [HIS] A:2077 [C] ✔
B0:29 [GLN] BA:1045 [C] W:59 [HIS] A:2078 [C] ✔
B0:53 [MET] BA:2453 [G] W:83 [VAL] A:2873 [A] ✔
B0:69 [PHE] BA:979 [C] W:99 [TYR] A:2063 [G] ✔
B0:69 [PHE] BA:980 [C] W:99 [TYR] A:2064 [A] ✔
B0:60 [PHE] BA:2452 [C] W:90 [TYR] A:2872 [C] ✔
B0:60 [PHE] BA:2453 [G] W:90 [TYR] A:2873 [A] ✔
B0:60 [PHE] BA:2454 [A] W:90 [TYR] A:2874 [A] ✔
B0:27 [GLU] BA:978 [G] W:57 [GLU] A:2062 [A] ✔
B0:27 [GLU] BA:979 [C] W:57 [GLU] A:2063 [G] ✔
B0:39 [ARG] BA:2443 [C] W:69 [THR] A:2862 [C] ✔
B0:56 [ASP] BA:2451 [C] W:86 [ASN] A:2871 [U] ✔
B0:56 [ASP] BA:2452 [C] W:86 [ASN] A:2872 [C] ✔
B0:35 [ASN] BA:2441 [G] W:65 [ASN] A:2860 [G] ✔
B0:35 [ASN] BA:2442 [G] W:65 [ASN] A:2861 [A] ✔
B0:20 [ARG] BA:2358 [G] W:50 [ARG] A:2834 [C] ✔
B0:20 [ARG] BA:2359 [G] W:50 [ARG] A:2835 [C] ✔
B0:20 [ARG] BA:2360 [U] W:50 [ARG] A:2836 [C] ✔
B0:20 [ARG] BA:2444 [C] W:50 [ARG] A:2863 [U] ✔
B0:20 [ARG] BA:2445 [U] W:50 [ARG] A:2865 [C] ✔
B0:36 [ILE] BA:2441 [G] W:66 [ILE] A:2860 [G] ✔
B0:36 [ILE] BA:2442 [G] W:66 [ILE] A:2861 [A] ✔
B0:36 [ILE] BA:2443 [C] W:66 [ILE] A:2862 [C] ✔
B0:36 [ILE] BA:2452 [C] W:66 [ILE] A:2872 [C] ✔
B0:26 [TYR] BA:979 [C] W:56 [MET] A:2063 [G] ✔
B0:26 [TYR] BA:980 [C] W:56 [MET] A:2064 [A] ✔
B0:26 [TYR] BA:1043 [G] W:56 [MET] A:2076 [C] ✔
B0:26 [TYR] BA:1044 [U] W:56 [MET] A:2077 [C] ✔
B0:26 [TYR] BA:2357 [A] W:56 [MET] A:2833 [A] ✔
B0:58 [THR] BA:2452 [C] W:88 [CYS] A:2872 [C] ✔
B0:34 [GLY] BA:2440 [A] W:64 [GLY] A:2859 [A] ✔
B0:34 [GLY] BA:2441 [G] W:64 [GLY] A:2860 [G] ✔
B0:34 [GLY] BA:2442 [G] W:64 [GLY] A:2861 [A] ✔
B0:23 [VAL] BA:980 [C] W:53 [ILE] A:2064 [A] ✔
B0:62 [LEU] BA:2454 [A] W:92 [LEU] A:2874 [A] ✔
B0:44 [ARG] BA:981 [U] W:74 [ARG] A:2065 [A] ✔
B0:45 [PHE] BA:980 [C] W:75 [TRP] A:2064 [A] ✔
B0:45 [PHE] BA:981 [U] W:75 [TRP] A:2065 [A] ✔
B0:32 [ARG] BA:2440 [A] W:62 [HIS] A:2859 [A] ❌ 7OF0_W_A
B0:19 [LYS] BA:2350 [U] W:49 [ARG] A:2826 [G] ❌ 7OF0_W_A
B0:27 [GLU] BA:1045 [C] W:57 [GLU] A:2078 [C] ❌ 7OF0_W_A
B0:39 [ARG] BA:2442 [G] W:69 [THR] A:2861 [A] ❌ 7OF0_W_A
B0:39 [ARG] BA:2451 [C] W:69 [THR] A:2871 [U] ❌ 7OF0_W_A
B0:39 [ARG] BA:2452 [C] W:69 [THR] A:2872 [C] ❌ 7OF0_W_A
B0:26 [TYR] BA:978 [G] W:56 [MET] A:2062 [A] ❌ 7OF0_W_A
B0:34 [GLY] BA:2452 [C] W:64 [GLY] A:2872 [C] ❌ 7OF0_W_A
B0:44 [ARG] BA:982 [G] W:74 [ARG] A:2066 [C] ❌ 7OF0_W_A
B0:77 [ARG] BA:982 [G] W:129 [THR] A:2066 [C] ❌ 4W2F_B0_AX,BA
B0:19 [LYS] BA:2351 [C] W:49 [ARG] A:2827 [A] ❌ 4W2F_B0_AX,BA
B0:19 [LYS] BA:2360 [U] W:49 [ARG] A:2836 [C] ❌ 4W2F_B0_AX,BA
B0:19 [LYS] BA:2444 [C] W:49 [ARG] A:2863 [U] ❌ 4W2F_B0_AX,BA
B0:19 [LYS] BA:2358 [G] W:49 [ARG] A:2834 [C] ❌ 4W2F_B0_AX,BA
B0:21 [LEU] BA:2357 [A] W:51 [GLN] A:2833 [A] ❌ 4W2F_B0_AX,BA
B0:23 [VAL] BA:2357 [A] W:53 [ILE] A:2833 [A] ❌ 4W2F_B0_AX,BA
B0:27 [GLU] BA:1044 [U] W:57 [GLU] A:2077 [C] ❌ 4W2F_B0_AX,BA
B0:41 [ARG] BA:2351 [C] W:71 [ARG] A:2827 [A] ❌ 4W2F_B0_AX,BA
B0:42 [GLY] BA:981 [U] W:72 [HIS] A:2065 [A] ❌ 4W2F_B0_AX,BA
B0:44 [ARG] BA:980 [C] W:74 [ARG] A:2064 [A] ❌ 4W2F_B0_AX,BA
B0:44 [ARG] BA:2357 [A] W:74 [ARG] A:2833 [A] ❌ 4W2F_B0_AX,BA
B0:55 [ARG] BA:2472 [G] W:85 [LYS] A:2890 [U] ❌ 7OF0_A:2890 no longer at interface
B0:19 [LYS] BA:2349 [C] W:49 [ARG] A:2825 [G] ❌ 7OF0_A:2825 no longer at interface
B0:39 [ARG] BA:2450 [G] W:69 [THR] A:2870 [G] ❌ 7OF0_A:2870 no longer at interface
B0:44 [ARG] BA:2356 [A] W:74 [ARG] A:2832 [A] ❌ 4W2F_BA:2356 no longer at interface
B0:28 [GLY] BA:1045 [C] W:58 [GLY] A:2078 [C] ❌ 7OF0_W:58 no longer at interface
B0:25 [ARG] BA:2442 [G] W:55 [LYS] A:2861 [A] ❌ 7OF0_W:55 no longer at interface
B0:25 [ARG] BA:2443 [C] W:55 [LYS] A:2862 [C] ❌ 7OF0_W:55 no longer at interface
B0:70 [GLN] BA:980 [C] W:100 [THR] A:2064 [A] ❌ 4W2F_B0:70 no longer at interface
B0:71 [ASP] BA:979 [C] W:101 [LYS] A:2063 [G] ❌ 4W2F_B0:71 no longer at interface
B0:71 [ASP] BA:980 [C] W:101 [LYS] A:2064 [A] ❌ 4W2F_B0:71 no longer at interface
B0:71 [ASP] BA:981 [U] W:101 [LYS] A:2065 [A] ❌ 4W2F_B0:71 no longer at interface
B0:71 [ASP] BA:982 [G] W:101 [LYS] A:2066 [C] ❌ 4W2F_B0:71 no longer at interface
B0:76 [GLY] BA:982 [G] W:128 [LYS] A:2066 [C] ❌ 4W2F_B0:76 no longer at interface
B0:22 [GLY] BA:2358 [G] W:52 [GLY] A:2834 [C] ❌ 4W2F_B0:22 no longer at interface
B0:22 [GLY] BA:2357 [A] W:52 [GLY] A:2833 [A] ❌ 4W2F_B0:22 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal L27 protein Bacterial large subunit ribosomal RNA 0.94 1.73 0.26 0.76 0.96 0.87 0.93 0.83 0.71 0.34 0.42


Other pairs involving 4W2F_B0_AX,BA or 7OF0_W_A

Total number of entries: 11

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4W2F_B0_AX,BA 4Y4O_10_1A 0.99 0.99 0.88 0.98 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare
4W2F_B0_AX,BA 6S0Z_U_A 0.85 0.96 0.92 0.56 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare
4W2F_B0_AX,BA 7OF0_W_A 0.83 0.94 1.73 0.26 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare
4W2F_B0_AX,BA 7K00_v_a 0.92 0.96 0.87 0.62 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare
4W2F_B0_AX,BA 6XHV_10_1A,1x 0.99 0.97 0.74 0.88 Ribosomal L27 protein Bacterial large subunit ribosomal RNA & tRNA compare
4W2F_B0_AX,BA 7N1P_La_23,Dt 0.90 0.95 1.41 0.56 Ribosomal L27 protein Bacterial large subunit ribosomal RNA & tRNA compare
4W2F_B0_AX,BA 7RYG_V_A 0.94 0.96 2.3 0.65 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare
7OF0_W_A 7RYG_V_A 0.50 0.91 3.52 0.19 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare
6S0Z_U_A 7OF0_W_A 0.76 0.94 1.77 0.23 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare
4Y4O_10_1A 7OF0_W_A 0.81 0.95 1.78 0.26 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare
6XHV_10_1A,1x 7OF0_W_A 0.82 0.94 1.31 0.26 Ribosomal L27 protein Bacterial large subunit ribosomal RNA compare